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Aliases for LOC105369209 Gene

Subcategory (RNA class) for LOC105369209 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369209 Gene

  • Uncharacterized LOC105369209 3
  • Putative Uncharacterized Protein FLJ44790 3

External Ids for LOC105369209 Gene

Previous GeneCards Identifiers for LOC105369209 Gene

  • GC20U901042

Summaries for LOC105369209 Gene

GeneCards Summary for LOC105369209 Gene

LOC105369209 (Uncharacterized LOC105369209) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369209 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369209 Gene

Genomics for LOC105369209 Gene

GeneHancer (GH) Regulatory Elements for LOC105369209 Gene

Promoters and enhancers for LOC105369209 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J062227 Enhancer 0.9 ENCODE dbSUPER 600.7 +0.3 340 0.9 HDGF CTBP1 MNT SP2 REST MYRF RNF2 ZNF592 TFDP1 SAP130 LOC105369209 MTG2 OSBPL2
GH20J062229 Enhancer 1.1 Ensembl dbSUPER 0.7 +2.1 2125 1.2 MTA3 ZNF121 NFIB IKZF1 PRDM1 EGR1 HDGF CREB1 ZNF24 YBX1 OSBPL2 DIDO1 TAF4 RPS21 ENSG00000226332 YTHDF1 MTG2 LAMA5-AS1 LOC105369209
GH20J062231 Enhancer 0.9 dbSUPER 0.7 +4.8 4802 2.2 MTA3 NFIB NCOA3 MYC SP7 POLR2A KLF14 HDGF CREB1 ZBTB33 OSBPL2 DIDO1 RPS21 TAF4 ENSG00000226332 LAMA5-AS1 LOC105369209 GC20M062290
GH20J062234 Enhancer 0.7 ENCODE 0.4 +7.2 7248 2.1 SP7 CREB1 ZNF639 ZNF24 KLF9 SCRT2 ZNF524 CTBP1 ZNF580 PTBP1 OSBPL2 LAMA5-AS1 LOC105369209 GC20M062290
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369209 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369209 Gene

Genomic Locations for LOC105369209 Gene
chr20:62,227,876-62,235,050
(GRCh38/hg38)
Size:
7,175 bases
Orientation:
Plus strand

Genomic View for LOC105369209 Gene

Genes around LOC105369209 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369209 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369209 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369209 Gene

Proteins for LOC105369209 Gene

Post-translational modifications for LOC105369209 Gene

No Post-translational modifications

Other Protein References for LOC105369209 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC105369209 Gene

Domains & Families for LOC105369209 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369209 Gene

Function for LOC105369209 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369209 Gene

Localization for LOC105369209 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369209 Gene

Pathways & Interactions for LOC105369209 Gene

PathCards logo

SuperPathways for LOC105369209 Gene

No Data Available

Interacting Proteins for LOC105369209 Gene

Gene Ontology (GO) - Biological Process for LOC105369209 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369209 Gene

Drugs & Compounds for LOC105369209 Gene

No Compound Related Data Available

Transcripts for LOC105369209 Gene

mRNA/cDNA for LOC105369209 Gene

(2) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369209 Gene

No ASD Table

Relevant External Links for LOC105369209 Gene

GeneLoc Exon Structure for
LOC105369209

Expression for LOC105369209 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369209 Gene

Orthologs for LOC105369209 Gene

No data available for Orthologs and Evolution for LOC105369209 Gene

Paralogs for LOC105369209 Gene

No data available for Paralogs for LOC105369209 Gene

Variants for LOC105369209 Gene

Sequence variations from dbSNP and Humsavar for LOC105369209 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000065121 -- 62,227,762(+) C/T upstream_transcript_variant
rs1000071941 -- 62,229,543(+) A/G intron_variant
rs1000464206 -- 62,231,857(+) C/G intron_variant
rs1000669254 -- 62,226,854(+) G/C upstream_transcript_variant
rs1000722036 -- 62,232,048(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369209 Gene

Disorders for LOC105369209 Gene

No disorders were found for LOC105369209 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369209 Gene

Publications for LOC105369209 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC105369209 Gene

Products for LOC105369209 Gene

Sources for LOC105369209 Gene

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