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Aliases for LOC105369149 Gene

Subcategory (RNA class) for LOC105369149 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105369149 Gene

  • Uncharacterized LOC105369149 3

External Ids for LOC105369149 Gene

Previous GeneCards Identifiers for LOC105369149 Gene

  • GC11U902563

Summaries for LOC105369149 Gene

GeneCards Summary for LOC105369149 Gene

LOC105369149 (Uncharacterized LOC105369149) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105369149 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105369149 Gene

Genomics for LOC105369149 Gene

GeneHancer (GH) Regulatory Elements for LOC105369149 Gene

Promoters and enhancers for LOC105369149 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J009779 Enhancer 0.3 dbSUPER 600.7 +0.2 179 2.8 ZNF7 GC11M009781 PIR54730 LOC105369149 ENSG00000254865 SBF2 SBF2-AS1 LOC101928008
GH11J009784 Enhancer 0.9 ENCODE dbSUPER 0.7 +4.4 4413 0.2 REST PKNOX1 ZNF24 MGA CTBP1 ZSCAN29 NCOR1 DPF2 TCF12 TAL1 ENSG00000254865 LOC105369149 SBF2-AS1 LOC101928008 SBF2
GH11J009786 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +8.3 8296 4.3 CBFA2T2 TRIM24 SMARCA4 POLR2A DPF2 IKZF1 PKNOX1 HDAC1 EP300 SCRT2 SBF2 ENSG00000254865 LOC101928008 SBF2-AS1 MRVI1 ZNF143 LOC105369149
GH11J009799 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +22.3 22260 5.5 ZNF121 ZSCAN21 BACH1 MAFK SP7 POLR2A ZNF740 ZNF316 CEBPB ZNF335 SBF2 CTR9 ZNF143 LOC101928008 ENSG00000254865 SBF2-AS1 SWAP70 LOC105369149
GH11J009791 Enhancer 1 Ensembl ENCODE 0.4 +11.8 11813 1 CBFA2T2 BACH1 TRIM24 EGR1 SMARCA4 GMEB1 DPF2 ATF1 LEF1 HDAC1 SBF2 LOC101928008 MRVI1 LOC105369149 SBF2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105369149 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105369149 Gene

Genomic Locations for LOC105369149 Gene
chr11:9,780,376-9,792,120
(GRCh38/hg38)
Size:
11,745 bases
Orientation:
Plus strand

Genomic View for LOC105369149 Gene

Genes around LOC105369149 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105369149 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105369149 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105369149 Gene

Proteins for LOC105369149 Gene

Post-translational modifications for LOC105369149 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105369149 Gene

Domains & Families for LOC105369149 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105369149 Gene

Function for LOC105369149 Gene

Phenotypes From GWAS Catalog for LOC105369149 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105369149 Gene

Localization for LOC105369149 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105369149 Gene

Pathways & Interactions for LOC105369149 Gene

PathCards logo

SuperPathways for LOC105369149 Gene

No Data Available

Interacting Proteins for LOC105369149 Gene

Gene Ontology (GO) - Biological Process for LOC105369149 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105369149 Gene

Drugs & Compounds for LOC105369149 Gene

No Compound Related Data Available

Transcripts for LOC105369149 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105369149 Gene

No ASD Table

Relevant External Links for LOC105369149 Gene

GeneLoc Exon Structure for
LOC105369149

No data available for mRNA/cDNA for LOC105369149 Gene

Expression for LOC105369149 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105369149 Gene

Orthologs for LOC105369149 Gene

No data available for Orthologs and Evolution for LOC105369149 Gene

Paralogs for LOC105369149 Gene

No data available for Paralogs for LOC105369149 Gene

Variants for LOC105369149 Gene

Sequence variations from dbSNP and Humsavar for LOC105369149 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs10118 benign, Charcot-Marie-Tooth disease, type IV 9,779,054(+) G/A upstream_transcript_variant
rs1045634 benign, Charcot-Marie-Tooth disease, type IV 9,778,903(+) C/T upstream_transcript_variant
rs114604750 uncertain-significance, Charcot-Marie-Tooth disease, type IV 9,780,127(+) G/A upstream_transcript_variant
rs1288312315 uncertain-significance, Charcot-Marie-Tooth disease, type IV 9,784,425(+) T/C intron_variant
rs144513995 uncertain-significance, Charcot-Marie-Tooth disease, type IV 9,780,306(+) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105369149 Gene

Disorders for LOC105369149 Gene

No disorders were found for LOC105369149 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105369149 Gene

Publications for LOC105369149 Gene

No publications were found for LOC105369149 Gene.

No data available for External Links for LOC105369149 Gene

Products for LOC105369149 Gene

Sources for LOC105369149 Gene

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