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Aliases for LOC104613533 Gene

Subcategory (RNA class) for LOC104613533 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC104613533 Gene

  • Uncharacterized LOC104613533 3
  • Novel Transcript, Antisense To ST8SIA2 5
  • AC090985.1 5

External Ids for LOC104613533 Gene

Previous GeneCards Identifiers for LOC104613533 Gene

  • GC15U901910

Summaries for LOC104613533 Gene

GeneCards Summary for LOC104613533 Gene

LOC104613533 (Uncharacterized LOC104613533) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC104613533 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC104613533 Gene

Genomics for LOC104613533 Gene

GeneHancer (GH) Regulatory Elements for LOC104613533 Gene

Promoters and enhancers for LOC104613533 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J092469 Enhancer 0.4 FANTOM5 600.7 +1.9 1896 0.2 RFX1 BMI1 LOC104613533 C15orf32 GC15P092447
GH15J092135 Enhancer 0.2 Ensembl 5.2 +336.3 336345 0.4 LOC104613533 GC15P092170 SLCO3A1
GH15J092448 Enhancer 0.5 Ensembl ENCODE 0.3 +21.2 21203 3.6 FOS C15orf32 ENSG00000239197 ST8SIA2 GC15P092447 LOC104613533
GH15J092457 Enhancer 0.2 Ensembl 0.4 +14.0 14045 0.2 GC15P092447 LOC104613533 ST8SIA2
GH15J092459 Enhancer 0.2 Ensembl 0.4 +12.4 12445 0.2 GC15P092447 LOC104613533 ST8SIA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC104613533 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC104613533 Gene

Genomic Locations for LOC104613533 Gene
chr15:92,470,233-92,471,546
(GRCh38/hg38)
Size:
1,314 bases
Orientation:
Minus strand
chr15:93,013,463-93,014,776
(GRCh37/hg19)
Size:
1,314 bases
Orientation:
Minus strand

Genomic View for LOC104613533 Gene

Genes around LOC104613533 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC104613533 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC104613533 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC104613533 Gene

Proteins for LOC104613533 Gene

Post-translational modifications for LOC104613533 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC104613533 Gene

Domains & Families for LOC104613533 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC104613533 Gene

Function for LOC104613533 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC104613533 Gene

Localization for LOC104613533 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC104613533 Gene

Pathways & Interactions for LOC104613533 Gene

PathCards logo

SuperPathways for LOC104613533 Gene

No Data Available

Interacting Proteins for LOC104613533 Gene

Gene Ontology (GO) - Biological Process for LOC104613533 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC104613533 Gene

Drugs & Compounds for LOC104613533 Gene

No Compound Related Data Available

Transcripts for LOC104613533 Gene

mRNA/cDNA for LOC104613533 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC104613533 Gene

No ASD Table

Relevant External Links for LOC104613533 Gene

GeneLoc Exon Structure for
LOC104613533

Expression for LOC104613533 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC104613533 Gene

Orthologs for LOC104613533 Gene

Evolution for LOC104613533 Gene

ENSEMBL:
Gene Tree for LOC104613533 (if available)
TreeFam:
Gene Tree for LOC104613533 (if available)

No data available for Orthologs for LOC104613533 Gene

Paralogs for LOC104613533 Gene

No data available for Paralogs for LOC104613533 Gene

Variants for LOC104613533 Gene

Sequence variations from dbSNP and Humsavar for LOC104613533 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000079101 -- 92,471,081(-) A/T intron_variant
rs1000131502 -- 92,471,366(-) T/G non_coding_transcript_variant
rs1000827382 -- 92,469,844(-) A/G downstream_transcript_variant
rs1001156788 -- 92,470,183(-) G/T downstream_transcript_variant
rs1003056454 -- 92,469,794(-) C/G downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC104613533 Gene

Disorders for LOC104613533 Gene

No disorders were found for LOC104613533 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC104613533 Gene

Publications for LOC104613533 Gene

No publications were found for LOC104613533 Gene.

No data available for External Links for LOC104613533 Gene

Products for LOC104613533 Gene

Sources for LOC104613533 Gene

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