Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC104054148 Gene

Subcategory (RNA class) for LOC104054148 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC104054148 Gene

  • Uncharacterized LOC104054148 3

External Ids for LOC104054148 Gene

Previous GeneCards Identifiers for LOC104054148 Gene

  • GC08U902029

Summaries for LOC104054148 Gene

GeneCards Summary for LOC104054148 Gene

LOC104054148 (Uncharacterized LOC104054148) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC104054148 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC104054148 Gene

Genomics for LOC104054148 Gene

GeneHancer (GH) Regulatory Elements for LOC104054148 Gene

Promoters and enhancers for LOC104054148 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J101983 Enhancer 0.2 Ensembl 600.7 -0.5 -531 0.2 LOC104054148 NCALD PDCL3P2
GH08J101979 Enhancer 0.9 Ensembl ENCODE 0.7 -4.5 -4527 2.6 FOSL2 CREB1 ZBTB33 BACH1 IKZF2 PKNOX1 SMARCC1 CEBPB JUN EED ENSG00000253629 LOC104054148 PDCL3P2 NCALD
GH08J101988 Enhancer 0.6 ENCODE 0.7 +4.1 4064 0.5 ZNF687 IKZF1 IKZF2 YBX1 ZNF592 NBN EBF1 ATF2 NFATC1 L3MBTL2 NCALD LOC104054148
GH08J101967 Enhancer 1 Ensembl ENCODE 0.4 -16.3 -16348 1.8 ZNF687 SP1 CREM MLLT1 IKZF1 RXRA IKZF2 CTBP1 PKNOX1 FOXA2 NCALD LOC104054148 PDCL3P2
GH08J102010 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.3 +27.6 27568 3.2 ZNF687 TRIM24 IKZF1 RXRA ZBTB33 IKZF2 ATF1 ATF7 ZNF24 SOX6 NCALD UBR5 LOC104054148
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC104054148 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC104054148 Gene

Genomic Locations for LOC104054148 Gene
chr8:101,984,432-101,994,850
(GRCh38/hg38)
Size:
10,419 bases
Orientation:
Plus strand

Genomic View for LOC104054148 Gene

Genes around LOC104054148 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC104054148 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC104054148 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC104054148 Gene

Proteins for LOC104054148 Gene

Post-translational modifications for LOC104054148 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC104054148 Gene

Domains & Families for LOC104054148 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC104054148 Gene

Function for LOC104054148 Gene

Phenotypes From GWAS Catalog for LOC104054148 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC104054148 Gene

Localization for LOC104054148 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC104054148 Gene

Pathways & Interactions for LOC104054148 Gene

PathCards logo

SuperPathways for LOC104054148 Gene

No Data Available

Interacting Proteins for LOC104054148 Gene

Gene Ontology (GO) - Biological Process for LOC104054148 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC104054148 Gene

Drugs & Compounds for LOC104054148 Gene

No Compound Related Data Available

Transcripts for LOC104054148 Gene

mRNA/cDNA for LOC104054148 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC104054148 Gene

No ASD Table

Relevant External Links for LOC104054148 Gene

GeneLoc Exon Structure for
LOC104054148

Expression for LOC104054148 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC104054148 Gene

Orthologs for LOC104054148 Gene

No data available for Orthologs and Evolution for LOC104054148 Gene

Paralogs for LOC104054148 Gene

No data available for Paralogs for LOC104054148 Gene

Variants for LOC104054148 Gene

Sequence variations from dbSNP and Humsavar for LOC104054148 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000245221 -- 101,993,291(+) T/C intron_variant
rs1000271873 -- 101,982,527(+) T/C upstream_transcript_variant
rs1000454071 -- 101,989,239(+) A/C/G intron_variant
rs1000581665 -- 101,995,230(+) C/A downstream_transcript_variant
rs1000847244 -- 101,991,854(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC104054148 Gene

Disorders for LOC104054148 Gene

No disorders were found for LOC104054148 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC104054148 Gene

Publications for LOC104054148 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC104054148 Gene

Products for LOC104054148 Gene

Sources for LOC104054148 Gene

Content
Loading form....