Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC103611081 Gene

Subcategory (RNA class) for LOC103611081 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC103611081 Gene

  • Uncharacterized LOC103611081 3
  • Novel Transcript 5
  • AP003486.1 5

External Ids for LOC103611081 Gene

Summaries for LOC103611081 Gene

GeneCards Summary for LOC103611081 Gene

LOC103611081 (Uncharacterized LOC103611081) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC103611081 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC103611081 Gene

Genomics for LOC103611081 Gene

GeneHancer (GH) Regulatory Elements for LOC103611081 Gene

Promoters and enhancers for LOC103611081 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J130868 Enhancer 0.2 Ensembl 600.7 +1.4 1446 0.8 LOC103611081 SNX19 ADAMTS8 ADAMTS15 GC11M130863 LINC02551
GH11J130827 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 16.6 +39.9 39935 6.1 CTCF RELA RAD21 RFX1 ZBTB44 SP1 DPF2 FOS IKZF1 FOSL1 LOC103611081 SNX19 LINC02551 ADAMTS8 GC11P130847 GC11P130806
GH11J130894 Enhancer 1 ENCODE dbSUPER 15.9 -24.4 -24442 0.8 CTCF CBFA2T2 RAD21 ZIC2 ZNF143 REST POLR2A TRIM22 LEF1 TCF7L2 SNX19 LOC103611081 ADAMTS8 LINC02551 ADAMTS15 GC11M130881 GC11P130904
GH11J130896 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 11.5 -27.5 -27541 3.2 SP1 RXRA FOXA2 JUND FOS ATF3 YY1 ZBTB33 GABPA NR2F2 SNX19 ADAMTS8 LOC103611081 LINC02551 ADAMTS15 GC11P130904 GC11M130881
GH11J130165 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 9.7 +703.2 703186 3.8 IKZF1 FOSL2 CREB1 ZNF600 PKNOX1 JUN SP1 JUND MAX FOS ST14 ADAMTS8 LINC02551 LOC103611081 PRDM10 GC11P130253
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC103611081 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC103611081 Gene

Genomic Locations for LOC103611081 Gene
chr11:130,866,249-130,870,247
(GRCh38/hg38)
Size:
3,999 bases
Orientation:
Minus strand
chr11:130,736,149-130,740,142
(GRCh37/hg19)
Size:
3,994 bases
Orientation:
Minus strand

Genomic View for LOC103611081 Gene

Genes around LOC103611081 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC103611081 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC103611081 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC103611081 Gene

Proteins for LOC103611081 Gene

Post-translational modifications for LOC103611081 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC103611081 Gene

Domains & Families for LOC103611081 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC103611081 Gene

Function for LOC103611081 Gene

Phenotypes From GWAS Catalog for LOC103611081 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC103611081 Gene

Localization for LOC103611081 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC103611081 Gene

Pathways & Interactions for LOC103611081 Gene

PathCards logo

SuperPathways for LOC103611081 Gene

No Data Available

Interacting Proteins for LOC103611081 Gene

Gene Ontology (GO) - Biological Process for LOC103611081 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC103611081 Gene

Drugs & Compounds for LOC103611081 Gene

No Compound Related Data Available

Transcripts for LOC103611081 Gene

mRNA/cDNA for LOC103611081 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC103611081 Gene

No ASD Table

Relevant External Links for LOC103611081 Gene

GeneLoc Exon Structure for
LOC103611081

Expression for LOC103611081 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC103611081 Gene

Orthologs for LOC103611081 Gene

Evolution for LOC103611081 Gene

ENSEMBL:
Gene Tree for LOC103611081 (if available)
TreeFam:
Gene Tree for LOC103611081 (if available)

No data available for Orthologs for LOC103611081 Gene

Paralogs for LOC103611081 Gene

No data available for Paralogs for LOC103611081 Gene

Variants for LOC103611081 Gene

Sequence variations from dbSNP and Humsavar for LOC103611081 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000188439 -- 130,868,052(-) G/C non_coding_transcript_variant
rs1000243244 -- 130,866,652(-) C/A non_coding_transcript_variant
rs1000720783 -- 130,866,949(-) T/A/C non_coding_transcript_variant
rs1001331130 -- 130,868,611(-) G/A non_coding_transcript_variant
rs1001660967 -- 130,868,250(-) G/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC103611081 Gene

Variant ID Type Subtype PubMed ID
dgv1296n100 CNV gain 25217958
esv3579973 CNV loss 25503493
nsv1035733 CNV gain 25217958
nsv551 CNV deletion 18451855
nsv556572 CNV gain 21841781
nsv556574 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC103611081 Gene

Disorders for LOC103611081 Gene

No disorders were found for LOC103611081 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC103611081 Gene

Publications for LOC103611081 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC103611081 Gene

Products for LOC103611081 Gene

Sources for LOC103611081 Gene

Content
Loading form....