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Aliases for LOC103352541 Gene

Subcategory (RNA class) for LOC103352541 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC103352541 Gene

  • Uncharacterized LOC103352541 3

External Ids for LOC103352541 Gene

Previous GeneCards Identifiers for LOC103352541 Gene

  • GC06U902881

Summaries for LOC103352541 Gene

GeneCards Summary for LOC103352541 Gene

LOC103352541 (Uncharacterized LOC103352541) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC103352541 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC103352541 Gene

Genomics for LOC103352541 Gene

GeneHancer (GH) Regulatory Elements for LOC103352541 Gene

Promoters and enhancers for LOC103352541 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J139989 Enhancer 0.7 ENCODE dbSUPER 600.7 +0.5 450 1.8 ZNF600 ZNF316 NFE2 MAFG ZNF335 LOC103352541 ENSG00000236013 LOC100507477
GH06J139975 Enhancer 1.2 ENCODE dbSUPER 0.4 +11.2 11155 10.1 ZNF652 CBFA2T2 ZNF148 ZNF384 ZSCAN21 NCOA3 SP7 ZNF174 SP1 KLF14 ENSG00000236013 LOC100507477 LOC103352541
GH06J140039 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -50.3 -50340 11.6 ZSCAN21 TRIM24 SP7 SP1 PRDM1 MZF1 FOSL2 CEBPG POLR2A ZNF600 ENSG00000236013 GC06M140048 LOC103352541 LOC100507477
GH06J140001 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -11.5 -11471 3.1 RCOR1 RAD21 JUND ENSG00000236013 LOC103352541 LOC100507477 GC06M140048
GH06J139996 Enhancer 0.8 Ensembl 0.4 -5.3 -5340 0.4 CC2D1A CTCF MLLT1 ZNF644 RAD21 CREB1 ARID2 REST CTBP1 ZNF316 LOC103352541 ENSG00000236013 LOC100507477 GC06M140048
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC103352541 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC103352541 Gene

Genomic Locations for LOC103352541 Gene
chr6:139,978,350-139,991,261
(GRCh38/hg38)
Size:
12,912 bases
Orientation:
Minus strand

Genomic View for LOC103352541 Gene

Genes around LOC103352541 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC103352541 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC103352541 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC103352541 Gene

Proteins for LOC103352541 Gene

Post-translational modifications for LOC103352541 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC103352541 Gene

Domains & Families for LOC103352541 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC103352541 Gene

Function for LOC103352541 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC103352541 Gene

Localization for LOC103352541 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC103352541 Gene

Pathways & Interactions for LOC103352541 Gene

PathCards logo

SuperPathways for LOC103352541 Gene

No Data Available

Interacting Proteins for LOC103352541 Gene

Gene Ontology (GO) - Biological Process for LOC103352541 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC103352541 Gene

Drugs & Compounds for LOC103352541 Gene

No Compound Related Data Available

Transcripts for LOC103352541 Gene

mRNA/cDNA for LOC103352541 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC103352541 Gene

No ASD Table

Relevant External Links for LOC103352541 Gene

GeneLoc Exon Structure for
LOC103352541

Expression for LOC103352541 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC103352541 Gene

Orthologs for LOC103352541 Gene

No data available for Orthologs and Evolution for LOC103352541 Gene

Paralogs for LOC103352541 Gene

No data available for Paralogs for LOC103352541 Gene

Variants for LOC103352541 Gene

Sequence variations from dbSNP and Humsavar for LOC103352541 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000299686 -- 139,978,259(-) T/C downstream_transcript_variant
rs1000368984 -- 139,984,679(-) G/T intron_variant
rs1000572500 -- 139,991,010(-) G/A/C non_coding_transcript_variant
rs1000713827 -- 139,989,058(-) T/C intron_variant
rs1001105956 -- 139,983,318(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC103352541 Gene

Variant ID Type Subtype PubMed ID
dgv6153n100 CNV loss 25217958
nsv604765 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC103352541 Gene

Disorders for LOC103352541 Gene

No disorders were found for LOC103352541 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC103352541 Gene

Publications for LOC103352541 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for LOC103352541 Gene

Products for LOC103352541 Gene

Sources for LOC103352541 Gene

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