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Aliases for LOC103171574 Gene

Subcategory (RNA class) for LOC103171574 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC103171574 Gene

  • Uncharacterized LOC103171574 3
  • AC243562.3 5

External Ids for LOC103171574 Gene

Summaries for LOC103171574 Gene

GeneCards Summary for LOC103171574 Gene

LOC103171574 (Uncharacterized LOC103171574) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC103171574 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC103171574 Gene

Genomics for LOC103171574 Gene

GeneHancer (GH) Regulatory Elements for LOC103171574 Gene

Promoters and enhancers for LOC103171574 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I084421 Promoter 0.9 Ensembl 550.8 -0.6 -618 1.4 CTCF ZSCAN4 ZBTB8A ATF2 ZFP69B ZNF335 ZNF692 ZBTB26 ZBTB20 LOC103171574 UBE2Q2P11 GC15M084455
GH15I084714 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.2 +293.4 293442 3.4 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 E2F8 ZNF143 ZNF548 SP3 SEC11A SCAND2P WDR73 NMB GOLGA6L5P ZNF592 LINC00933 UBE2Q2P1 GOLGA6L4 CSPG4P12
GH15I083446 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 10.6 -975.3 -975304 1.6 CLOCK ATF1 SIN3A ZNF2 ZBTB7B GLIS2 ARID2 FOS ZNF202 SP3 SH3GL3 GOLGA6L4 C15orf40 WHAMM SNHG21 FAM103A1 LOC103171574 CSPG4P11 GOLGA2P7 GC15M083457
GH15I085403 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 13.4 +983.7 983688 5.9 HDGF FOXA2 IRF4 GLIS2 ATF7 FOS RUNX3 JUNB ZNF518A NFIL3 GOLGA6L5P LINC00933 UBE2Q2P1 ENSG00000259276 LOC103171574 FABP5P9 GOLGA6L3 WDR73 ADAMTS7P4 SCAND2P
GH15I084999 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.6 +578.1 578051 1.3 FOXA2 RXRA ZNF449 MAX ZNF16 REST RAD21 FOXA1 NR2F2 GABPA GC15P085002 GOLGA6L5P GOLGA6L4 LINC00933 GOLGA6L3 UBE2Q2P1 WDR73 LOC103171574 CSPG4P11 SCAND2P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC103171574 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC103171574 Gene

Genomic Locations for LOC103171574 Gene
chr15:84,422,519-84,425,882
(GRCh38/hg38)
Size:
3,364 bases
Orientation:
Plus strand
chr15:84,977,316-84,980,581
(GRCh37/hg19)

Genomic View for LOC103171574 Gene

Genes around LOC103171574 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC103171574 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC103171574 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC103171574 Gene

Proteins for LOC103171574 Gene

Post-translational modifications for LOC103171574 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC103171574 Gene

Domains & Families for LOC103171574 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC103171574 Gene

Function for LOC103171574 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC103171574 Gene

Localization for LOC103171574 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC103171574 Gene

Pathways & Interactions for LOC103171574 Gene

SuperPathways for LOC103171574 Gene

No Data Available

Interacting Proteins for LOC103171574 Gene

Gene Ontology (GO) - Biological Process for LOC103171574 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC103171574 Gene

Drugs & Compounds for LOC103171574 Gene

No Compound Related Data Available

Transcripts for LOC103171574 Gene

mRNA/cDNA for LOC103171574 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC103171574 Gene

No ASD Table

Relevant External Links for LOC103171574 Gene

GeneLoc Exon Structure for
LOC103171574

Expression for LOC103171574 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC103171574 Gene

genes like me logo Genes that share expression patterns with LOC103171574: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC103171574 Gene

Orthologs for LOC103171574 Gene

Evolution for LOC103171574 Gene

ENSEMBL:
Gene Tree for LOC103171574 (if available)
TreeFam:
Gene Tree for LOC103171574 (if available)

No data available for Orthologs for LOC103171574 Gene

Paralogs for LOC103171574 Gene

No data available for Paralogs for LOC103171574 Gene

Variants for LOC103171574 Gene

Sequence variations from dbSNP and Humsavar for LOC103171574 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000285466 -- 84,424,874(+) T/G intron_variant
rs1000501723 -- 84,426,184(+) C/G downstream_transcript_variant
rs1000572435 -- 84,423,587(+) G/A intron_variant
rs1001015137 -- 84,426,331(+) C/A downstream_transcript_variant
rs1002340737 -- 84,425,635(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC103171574 Gene

Variant ID Type Subtype PubMed ID
dgv2638n100 CNV gain 25217958
dgv2641n100 CNV loss 25217958
dgv2642n100 CNV gain+loss 25217958
esv22023 CNV gain 19812545
esv2672879 CNV deletion 23128226
esv2760048 CNV gain+loss 17122850
esv2761880 CNV gain 21179565
esv3569809 CNV gain 25503493
nsv428310 CNV gain+loss 18775914
nsv518289 CNV loss 19592680
nsv9290 CNV gain+loss 18304495
nsv974657 CNV duplication 23825009
nsv976960 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC103171574 Gene

Disorders for LOC103171574 Gene

Additional Disease Information for LOC103171574

No disorders were found for LOC103171574 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC103171574 Gene

Publications for LOC103171574 Gene

No publications were found for LOC103171574 Gene.

Products for LOC103171574 Gene

Sources for LOC103171574 Gene

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