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Aliases for LOC103171574 Gene

Subcategory (RNA class) for LOC103171574 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC103171574 Gene

  • Uncharacterized LOC103171574 3

External Ids for LOC103171574 Gene

Summaries for LOC103171574 Gene

GeneCards Summary for LOC103171574 Gene

LOC103171574 (Uncharacterized LOC103171574) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC103171574 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC103171574 Gene

Genomics for LOC103171574 Gene

GeneHancer (GH) Regulatory Elements for LOC103171574 Gene

Promoters and enhancers for LOC103171574 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J084421 Promoter 0.9 Ensembl 600.7 -1.0 -1018 3.4 ZBTB8A ZSCAN4 ZNF692 ZBTB20 ZBTB26 ZFP69B ZNF335 CTCF ATF2 LOC103171574 ENSG00000259774 UBE2Q2P11 DNM1P51 GC15M084482
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC103171574 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC103171574 Gene

Genomic Locations for LOC103171574 Gene
chr15:84,422,519-84,425,882
(GRCh38/hg38)
Size:
3,364 bases
Orientation:
Plus strand

Genomic View for LOC103171574 Gene

Genes around LOC103171574 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC103171574 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC103171574 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC103171574 Gene

Proteins for LOC103171574 Gene

Post-translational modifications for LOC103171574 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC103171574 Gene

Domains & Families for LOC103171574 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC103171574 Gene

Function for LOC103171574 Gene

Phenotypes From GWAS Catalog for LOC103171574 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC103171574 Gene

Localization for LOC103171574 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC103171574 Gene

Pathways & Interactions for LOC103171574 Gene

PathCards logo

SuperPathways for LOC103171574 Gene

No Data Available

Interacting Proteins for LOC103171574 Gene

Gene Ontology (GO) - Biological Process for LOC103171574 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC103171574 Gene

Drugs & Compounds for LOC103171574 Gene

No Compound Related Data Available

Transcripts for LOC103171574 Gene

mRNA/cDNA for LOC103171574 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC103171574 Gene

No ASD Table

Relevant External Links for LOC103171574 Gene

GeneLoc Exon Structure for
LOC103171574

Expression for LOC103171574 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC103171574 Gene

Orthologs for LOC103171574 Gene

No data available for Orthologs and Evolution for LOC103171574 Gene

Paralogs for LOC103171574 Gene

No data available for Paralogs for LOC103171574 Gene

Variants for LOC103171574 Gene

Sequence variations from dbSNP and Humsavar for LOC103171574 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000285466 -- 84,424,874(+) T/G intron_variant
rs1000501723 -- 84,426,184(+) C/G downstream_transcript_variant
rs1000572435 -- 84,423,587(+) G/A intron_variant
rs1001015137 -- 84,426,331(+) C/A/G downstream_transcript_variant
rs1002340737 -- 84,425,635(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC103171574 Gene

Variant ID Type Subtype PubMed ID
dgv2638n100 CNV gain 25217958
dgv2641n100 CNV loss 25217958
dgv2642n100 CNV gain+loss 25217958
esv22023 CNV gain 19812545
esv2672879 CNV deletion 23128226
esv2760048 CNV gain+loss 17122850
esv2761880 CNV gain 21179565
esv3569809 CNV gain 25503493
nsv428310 CNV gain+loss 18775914
nsv518289 CNV loss 19592680
nsv9290 CNV gain+loss 18304495
nsv974657 CNV duplication 23825009
nsv976960 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC103171574 Gene

Disorders for LOC103171574 Gene

No disorders were found for LOC103171574 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC103171574 Gene

Publications for LOC103171574 Gene

No publications were found for LOC103171574 Gene.

No data available for External Links for LOC103171574 Gene

Products for LOC103171574 Gene

Sources for LOC103171574 Gene

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