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Aliases for LOC102725258 Gene

Subcategory (RNA class) for LOC102725258 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102725258 Gene

  • Uncharacterized LOC102725258 3

External Ids for LOC102725258 Gene

Previous GeneCards Identifiers for LOC102725258 Gene

  • GC12U901976

Summaries for LOC102725258 Gene

GeneCards Summary for LOC102725258 Gene

LOC102725258 (Uncharacterized LOC102725258) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102725258 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102725258 Gene

Genomics for LOC102725258 Gene

GeneHancer (GH) Regulatory Elements for LOC102725258 Gene

Promoters and enhancers for LOC102725258 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J048196 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.7 +2.2 2175 4.4 HDGF SP1 ZFX ZKSCAN8 NKRF MLLT1 POLR2A GTF2F1 CSDE1 ZNF687 ENSG00000269514 ZNF641 ENSG00000240399 LMBR1L SENP1 DDX23 ENSG00000268069 LOC390314 ENSG00000258017 KMT2D
GH12J048189 Enhancer 0.9 Ensembl ENCODE 0.4 -7.3 -7301 0.6 CTCF PRDM1 RAD21 PRDM10 ZNF143 REST TRIM22 FOXA2 DEK SMC3 ENSG00000279875 ZNF641 ENSG00000269514 RPL32P27 LOC102725258
GH12J048194 Enhancer 0.5 Ensembl 0.7 -2.0 -2011 0.4 POLR2A CREB1 RFX1 ZNF512 PRDM1 ZNF366 JUND ZNF641 PFKM SENP1 LOC102725258 ENSG00000279875
GH12J048212 Enhancer 0.6 ENCODE 0.4 +15.9 15898 1 ZNF148 ZNF639 ZNF512 ZNF740 ZNF24 NRF1 MGA GABPA VEZF1 ZBTB12 ZNF641 ASB8 CCDC184 OR10AD1 ENSG00000269514 LOC102725258 ENSG00000258234
GH12J048235 Enhancer 0.8 Ensembl 0.3 +39.6 39599 1.6 ZKSCAN8 CBFA2T2 CSDE1 BACH1 ZNF639 SMARCA4 CAVIN1 DPF2 RFX1 ATF1 LOC390314 ENSG00000240399 DDX23 CCNT1 KANSL2 ZNF641 KMT2D CCDC184 ASB8 LMBR1L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102725258 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102725258 Gene

Genomic Locations for LOC102725258 Gene
chr12:48,197,002-48,252,461
(GRCh38/hg38)
Size:
55,460 bases
Orientation:
Plus strand

Genomic View for LOC102725258 Gene

Genes around LOC102725258 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102725258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102725258 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102725258 Gene

Proteins for LOC102725258 Gene

Post-translational modifications for LOC102725258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102725258 Gene

Domains & Families for LOC102725258 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102725258 Gene

Function for LOC102725258 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725258 Gene

Localization for LOC102725258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102725258 Gene

Pathways & Interactions for LOC102725258 Gene

PathCards logo

SuperPathways for LOC102725258 Gene

No Data Available

Interacting Proteins for LOC102725258 Gene

Gene Ontology (GO) - Biological Process for LOC102725258 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102725258 Gene

Drugs & Compounds for LOC102725258 Gene

No Compound Related Data Available

Transcripts for LOC102725258 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102725258 Gene

No ASD Table

Relevant External Links for LOC102725258 Gene

GeneLoc Exon Structure for
LOC102725258

No data available for mRNA/cDNA for LOC102725258 Gene

Expression for LOC102725258 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725258 Gene

Orthologs for LOC102725258 Gene

No data available for Orthologs and Evolution for LOC102725258 Gene

Paralogs for LOC102725258 Gene

No data available for Paralogs for LOC102725258 Gene

Variants for LOC102725258 Gene

Sequence variations from dbSNP and Humsavar for LOC102725258 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000081596 -- 48,240,197(+) T/A genic_downstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs1000216658 -- 48,221,266(+) G/A intron_variant
rs1000253122 -- 48,200,803(+) A/G genic_upstream_transcript_variant, intron_variant
rs1000442602 -- 48,228,079(+) C/G/T intron_variant
rs1000570007 -- 48,222,665(+) TTCTTT/TTCTTTCTTTCCTTCTTT intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102725258 Gene

Disorders for LOC102725258 Gene

No disorders were found for LOC102725258 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725258 Gene

Publications for LOC102725258 Gene

No publications were found for LOC102725258 Gene.

No data available for External Links for LOC102725258 Gene

Products for LOC102725258 Gene

Sources for LOC102725258 Gene

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