Aliases for LOC102725254 Gene

Subcategory (RNA class) for LOC102725254 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC102725254 Gene

  • Uncharacterized LOC102725254 3
  • Lnc-MPV17L2-1 170
  • HSALNG0124598 169
  • NONHSAG025120 94

External Ids for LOC102725254 Gene

Previous GeneCards Identifiers for LOC102725254 Gene

  • GC19U901834

Summaries for LOC102725254 Gene

GeneCards Summary for LOC102725254 Gene

LOC102725254 (Uncharacterized LOC102725254) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102725254 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102725254 Gene

Genomics for LOC102725254 Gene

GeneHancer (GH) Regulatory Elements for LOC102725254 Gene

Promoters and enhancers for LOC102725254 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J018202 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +1.1 1124 6.5 SP1 CTCF SMARCE1 USF2 ATF1 FOS CREB1 CC2D1A NFYC ZNF701 ENSG00000268650 LOC102725254 RAB3A piR-34822-156 lnc-PDE4C-1 UPF1 ENSG00000268030 IQCN ENSG00000268938 COLGALT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102725254 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102725254 Gene

Genomic Locations for LOC102725254 Gene
chr19:18,204,730-18,205,569
(GRCh38/hg38)
Size:
840 bases
Orientation:
Plus strand

Genomic View for LOC102725254 Gene

Genes around LOC102725254 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102725254 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102725254 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102725254 Gene

Proteins for LOC102725254 Gene

Post-translational modifications for LOC102725254 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102725254 Gene

Domains & Families for LOC102725254 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102725254 Gene

Function for LOC102725254 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725254 Gene

Localization for LOC102725254 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102725254 Gene

Pathways & Interactions for LOC102725254 Gene

PathCards logo

SuperPathways for LOC102725254 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102725254 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102725254 Gene

Drugs & Compounds for LOC102725254 Gene

No Compound Related Data Available

Transcripts for LOC102725254 Gene

mRNA/cDNA for LOC102725254 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102725254 Gene

No ASD Table

Relevant External Links for LOC102725254 Gene

GeneLoc Exon Structure for
LOC102725254

Expression for LOC102725254 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102725254 Gene

genes like me logo Genes that share expression patterns with LOC102725254: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725254 Gene

Orthologs for LOC102725254 Gene

No data available for Orthologs and Evolution for LOC102725254 Gene

Paralogs for LOC102725254 Gene

No data available for Paralogs for LOC102725254 Gene

Variants for LOC102725254 Gene

Sequence variations from dbSNP and Humsavar for LOC102725254 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1002367915 -- 18,206,041(+) T/C downstream_transcript_variant
rs1003258949 -- 18,203,739(+) C/A upstream_transcript_variant
rs1003591834 -- 18,204,515(+) G/T upstream_transcript_variant
rs1003642893 -- 18,204,841(+) A/G non_coding_transcript_variant
rs1005117184 -- 18,204,023(+) A/C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102725254 Gene

Disorders for LOC102725254 Gene

No disorders were found for LOC102725254 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725254 Gene

Publications for LOC102725254 Gene

No publications were found for LOC102725254 Gene.

No data available for External Links for LOC102725254 Gene

Products for LOC102725254 Gene

Sources for LOC102725254 Gene