Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC102725238 Gene

Subcategory (RNA class) for LOC102725238 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102725238 Gene

  • Uncharacterized LOC102725238 3

External Ids for LOC102725238 Gene

Previous GeneCards Identifiers for LOC102725238 Gene

  • GC17U902046

Summaries for LOC102725238 Gene

GeneCards Summary for LOC102725238 Gene

LOC102725238 (Uncharacterized LOC102725238) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC102725238 include Lipodystrophy, Congenital Generalized, Type 4.

Additional gene information for LOC102725238 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102725238 Gene

Genomics for LOC102725238 Gene

GeneHancer (GH) Regulatory Elements for LOC102725238 Gene

Promoters and enhancers for LOC102725238 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J042419 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 -1.2 -1243 5.2 ZFX SP1 ELF3 POLR2A MLLT1 AHR CDC5L NCOA6 ZBTB7A TRIM24 CAVIN1 LOC102725238 LINC00910 HMGN1P29 CNTD1 NBR2 RETREG3 TUBG2 NAGLU ENSG00000267758
GH17J042405 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -15.9 -15892 3 CC2D1A CTCF SIX5 ZNF148 CEBPG SP7 ELF1 SP1 CREM ZNF639 ENSG00000267340 KLHL10 STAT3 NT5C3B NAGLU RAMP2 CNP CAVIN1 LOC102725238
GH17J042414 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -7.8 -7755 1.9 ZNF121 PKNOX1 RFX1 HDGF ZNF366 POLR2A NAGLU BECN1 TUBG2 STAT3 HSD17B1 CAVIN1 LOC102725238
GH17J042427 Enhancer 1.1 ENCODE dbSUPER 0.4 +5.4 5396 1.4 ELF3 CTCF MNT ZNF24 MAFK SP7 PPARG PRDM1 ZNF644 RAD21 ATP6V0A1 NAGLU WNK4 LOC102725238 CAVIN1 RNU7-97P
GH17J042438 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +17.7 17713 4.2 CTCF ELF3 CEBPG PPARG ZNF384 ZNF644 HMG20B ZBTB8A SOX13 PRDM10 RNU7-97P TUBG2 NAGLU WNK4 HSD17B1P1 NBR2 LOC102725238 ATP6V0A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102725238 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102725238 Gene

Genomic Locations for LOC102725238 Gene
chr17:42,423,187-42,440,922
(GRCh38/hg38)
Size:
17,736 bases
Orientation:
Plus strand

Genomic View for LOC102725238 Gene

Genes around LOC102725238 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102725238 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102725238 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102725238 Gene

Proteins for LOC102725238 Gene

Post-translational modifications for LOC102725238 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102725238 Gene

Domains & Families for LOC102725238 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102725238 Gene

Function for LOC102725238 Gene

Phenotypes From GWAS Catalog for LOC102725238 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725238 Gene

Localization for LOC102725238 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102725238 Gene

Pathways & Interactions for LOC102725238 Gene

PathCards logo

SuperPathways for LOC102725238 Gene

No Data Available

Interacting Proteins for LOC102725238 Gene

Gene Ontology (GO) - Biological Process for LOC102725238 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102725238 Gene

Drugs & Compounds for LOC102725238 Gene

No Compound Related Data Available

Transcripts for LOC102725238 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102725238 Gene

No ASD Table

Relevant External Links for LOC102725238 Gene

GeneLoc Exon Structure for
LOC102725238

No data available for mRNA/cDNA for LOC102725238 Gene

Expression for LOC102725238 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725238 Gene

Orthologs for LOC102725238 Gene

No data available for Orthologs and Evolution for LOC102725238 Gene

Paralogs for LOC102725238 Gene

No data available for Paralogs for LOC102725238 Gene

Variants for LOC102725238 Gene

Sequence variations from dbSNP and Humsavar for LOC102725238 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs139531639 uncertain-significance, not specified, Familial partial lipodystrophy 42,422,930(+) G/T upstream_transcript_variant
rs146547678 uncertain-significance, not specified, not provided 42,422,742(+) A/T upstream_transcript_variant
rs148239625 uncertain-significance, Familial partial lipodystrophy 42,422,636(+) C/G upstream_transcript_variant
rs1555588981 likely-pathogenic, Lipodystrophy, congenital generalized, type 4 42,422,899(+) G/A upstream_transcript_variant
rs548579969 uncertain-significance, Familial partial lipodystrophy 42,423,147(+) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102725238 Gene

Disorders for LOC102725238 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC102725238 Gene - From: GeneCards

Disorder Aliases PubMed IDs
lipodystrophy, congenital generalized, type 4
  • cgl4
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC102725238: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725238 Gene

Publications for LOC102725238 Gene

No publications were found for LOC102725238 Gene.

No data available for External Links for LOC102725238 Gene

Products for LOC102725238 Gene

Sources for LOC102725238 Gene

Content
Loading form....