LOC102725228 Gene (RNA Gene)

Uncharacterized LOC102725228

GC13M112688
GIFtS:
5

Aliases for LOC102725228 Gene

Subcategory (RNA class) for LOC102725228 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102725228 Gene

  • Uncharacterized LOC102725228 3

External Ids for LOC102725228 Gene

Previous GeneCards Identifiers for LOC102725228 Gene

  • GC13U901074

Summaries for LOC102725228 Gene

GeneCards Summary for LOC102725228 Gene

LOC102725228 (Uncharacterized LOC102725228) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102725228 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102725228 Gene

Genomics for LOC102725228 Gene

GeneHancer (GH) Regulatory Elements for LOC102725228 Gene

Promoters and enhancers for LOC102725228 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH13J112684 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.0 41 9.9 ZBTB40 ZBTB6 POLR2A NR2F1 NR2F6 MIXL1 ZNF362 MYC ELF1 HLF ATP11A ENSG00000274922 LOC102725228 ATP11AUN ATP11A-AS1 MCF2L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102725228 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102725228 Gene

Genomic Locations for LOC102725228 Gene
chr13:112,686,769-112,689,917
(GRCh38/hg38)
Size:
3,149 bases
Orientation:
Minus strand

Genomic View for LOC102725228 Gene

Genes around LOC102725228 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102725228 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102725228 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC102725228 Gene

Proteins for LOC102725228 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC102725228 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102725228 Gene

Domains & Families for LOC102725228 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102725228 Gene

Function for LOC102725228 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725228 Gene

Localization for LOC102725228 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102725228 Gene

Pathways & Interactions for LOC102725228 Gene

PathCards logo

SuperPathways for LOC102725228 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102725228 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102725228 Gene

Drugs & Compounds for LOC102725228 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC102725228 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC102725228 Gene

(1) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102725228 Gene

No ASD Table

Relevant External Links for LOC102725228 Gene

GeneLoc Exon Structure for
LOC102725228

Expression for LOC102725228 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725228 Gene

Orthologs for LOC102725228 Gene

No data available for Orthologs and Evolution for LOC102725228 Gene

Paralogs for LOC102725228 Gene

No data available for Paralogs for LOC102725228 Gene

Variants for LOC102725228 Gene

Sequence variations from dbSNP and Humsavar for LOC102725228 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000289978 -- 112,686,492(-) G/A downstream_transcript_variant
rs1000608654 -- 112,691,590(-) C/T upstream_transcript_variant
rs1001770550 -- 112,689,350(-) C/T intron_variant
rs1002188769 -- 112,689,712(-) C/T non_coding_transcript_variant
rs1002626356 -- 112,690,813(-) C/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102725228 Gene

Disorders for LOC102725228 Gene

No disorders were found for LOC102725228 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725228 Gene

Publications for LOC102725228 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC102725228 Gene

Products for LOC102725228 Gene

Sources for LOC102725228 Gene