Aliases for LOC102725228 Gene
Subcategory (RNA class) for LOC102725228 Gene
ncRNA
Quality Score for this RNA gene is
13
Aliases for LOC102725228 Gene
- Uncharacterized LOC102725228 3
External Ids for LOC102725228 Gene
- Entrez Gene: 102725228
Previous GeneCards Identifiers for LOC102725228 Gene
- GC13U901074
Summaries for LOC102725228 Gene
GeneCards Summary for LOC102725228 Gene
LOC102725228 (Uncharacterized LOC102725228) is an RNA Gene, and is affiliated with the ncRNA class.
Additional gene information for LOC102725228 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102725228 Gene
Genomics for LOC102725228 Gene
GeneHancer (GH) Regulatory Elements for LOC102725228 Gene
Promoters and enhancers for LOC102725228 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH13J112684 | Promoter/Enhancer | 2.2 | EPDnew Ensembl ENCODE dbSUPER | 600.7 | +0.0 | 41 | 9.9 | ELF3 ZNF148 POLR2A CEBPG ZNF687 ZSCAN21 SP7 SP1 HNF1A SP5 | ATP11A ENSG00000274922 GC13M112689 LOC102725228 ATP11AUN ATP11A-AS1 MCF2L |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC102725228 on UCSC Golden Path with GeneCards custom track
Genomic Locations for LOC102725228 Gene
Genomic Locations for LOC102725228 Gene
- chr13:112,686,769-112,689,917
- (GRCh38/hg38)
- Size:
- 3,149 bases
- Orientation:
- Minus strand
Genomic View for LOC102725228 Gene
Genes around LOC102725228 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 13q34 by Entrez Gene
LOC102725228 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC102725228 Gene
Proteins for LOC102725228 Gene
Post-translational modifications for LOC102725228 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC102725228
- Origene Custom Protein Services for LOC102725228
No data available for DME Specific Peptides for LOC102725228 Gene
Domains & Families for LOC102725228 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102725228 Gene
Function for LOC102725228 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC102725228
-
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725228 Gene
Localization for LOC102725228 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102725228 Gene
Transcripts for LOC102725228 Gene
mRNA/cDNA for LOC102725228 Gene
- (1) Additional mRNA sequences :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC102725228 Gene
- GeneLoc Exon Structure for
- LOC102725228
Expression for LOC102725228 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725228 Gene
Orthologs for LOC102725228 Gene
No data available for Orthologs and Evolution for LOC102725228 Gene
Paralogs for LOC102725228 Gene
No data available for Paralogs for LOC102725228 Gene
Variants for LOC102725228 Gene
| SNP ID | Clin | Chr 13 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000289978 | -- | 112,686,492(-) | G/A | downstream_transcript_variant | |
| rs1000608654 | -- | 112,691,590(-) | C/T | upstream_transcript_variant | |
| rs1001770550 | -- | 112,689,350(-) | C/T | intron_variant | |
| rs1002188769 | -- | 112,689,712(-) | C/T | non_coding_transcript_variant | |
| rs1002626356 | -- | 112,690,813(-) | C/A | upstream_transcript_variant |
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102725228 Gene
Disorders for LOC102725228 Gene
No disorders were found for LOC102725228 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725228 Gene
Publications for LOC102725228 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
No data available for External Links for LOC102725228 Gene
Products for LOC102725228 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC102725228
- Origene Custom Protein Services for LOC102725228
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- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC102725228
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC102725228
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
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- Browse Sino Biological Assays
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC102725228
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC102725228
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC102725228
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC102725228
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC102725228
Sources for LOC102725228 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind