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Aliases for LOC102725227 Gene

Subcategory (RNA class) for LOC102725227 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102725227 Gene

  • Uncharacterized LOC102725227 3

External Ids for LOC102725227 Gene

Previous GeneCards Identifiers for LOC102725227 Gene

  • GC18U900838

Summaries for LOC102725227 Gene

GeneCards Summary for LOC102725227 Gene

LOC102725227 (Uncharacterized LOC102725227) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102725227 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102725227 Gene

Genomics for LOC102725227 Gene

GeneHancer (GH) Regulatory Elements for LOC102725227 Gene

Promoters and enhancers for LOC102725227 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J026655 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 0.7 +2.1 2117 3.6 PRDM1 MZF1 ZBTB8A ZNF600 PRDM10 ZIC2 ZSCAN4 ZEB2 POLR2A PATZ1 AQP4-AS1 KCTD1 PCAT18 LOC102725227
GH18J026650 Enhancer 0.9 ENCODE dbSUPER 0.7 -4.6 -4582 0.2 CTCF MCM2 PRDM1 MLLT1 RAD21 ZNF143 REST TRIM22 ZNF501 SP1 LOC102725227 KCTD1 CIAPIN1P
GH18J026686 Enhancer 1.2 UCNEbase FANTOM5 Ensembl dbSUPER 0.3 +31.5 31517 4.8 RAD51 USF1 FOXA1 AQP4-AS1 KCTD1 ENSG00000263677 PCAT18 LOC102725227
GH18J026649 Enhancer 0.7 ENCODE dbSUPER 0.4 -5.0 -5028 0.3 MLLT1 CTCF ZNF501 ZNF580 RCOR1 KCTD1 LOC102725227 CIAPIN1P
GH18J026616 Enhancer 1 Ensembl ENCODE 0.3 -36.8 -36787 2.2 MAFK SP7 CREB1 ZEB2 ZNF639 ZNF629 CTBP1 TCF7L2 CEBPB JUN CIAPIN1P LOC102725227 KCTD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102725227 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102725227 Gene

Genomic Locations for LOC102725227 Gene
chr18:26,654,484-26,689,436
(GRCh38/hg38)
Size:
34,953 bases
Orientation:
Plus strand

Genomic View for LOC102725227 Gene

Genes around LOC102725227 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102725227 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102725227 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102725227 Gene

Proteins for LOC102725227 Gene

Post-translational modifications for LOC102725227 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102725227 Gene

Domains & Families for LOC102725227 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102725227 Gene

Function for LOC102725227 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725227 Gene

Localization for LOC102725227 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102725227 Gene

Pathways & Interactions for LOC102725227 Gene

PathCards logo

SuperPathways for LOC102725227 Gene

No Data Available

Interacting Proteins for LOC102725227 Gene

Gene Ontology (GO) - Biological Process for LOC102725227 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102725227 Gene

Drugs & Compounds for LOC102725227 Gene

No Compound Related Data Available

Transcripts for LOC102725227 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102725227 Gene

No ASD Table

Relevant External Links for LOC102725227 Gene

GeneLoc Exon Structure for
LOC102725227

No data available for mRNA/cDNA for LOC102725227 Gene

Expression for LOC102725227 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725227 Gene

Orthologs for LOC102725227 Gene

No data available for Orthologs and Evolution for LOC102725227 Gene

Paralogs for LOC102725227 Gene

No data available for Paralogs for LOC102725227 Gene

Variants for LOC102725227 Gene

Sequence variations from dbSNP and Humsavar for LOC102725227 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000004907 -- 26,656,537(+) G/A intron_variant
rs1000084518 -- 26,673,958(+) C/A/T intron_variant
rs1000116550 -- 26,656,387(+) G/A intron_variant
rs1000129241 -- 26,656,497(+) G/A intron_variant
rs1000222951 -- 26,656,654(+) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102725227 Gene

Disorders for LOC102725227 Gene

No disorders were found for LOC102725227 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725227 Gene

Publications for LOC102725227 Gene

No publications were found for LOC102725227 Gene.

No data available for External Links for LOC102725227 Gene

Products for LOC102725227 Gene

Sources for LOC102725227 Gene

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