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Aliases for LOC102725220 Gene

Subcategory (RNA class) for LOC102725220 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102725220 Gene

  • Uncharacterized LOC102725220 3

External Ids for LOC102725220 Gene

Previous GeneCards Identifiers for LOC102725220 Gene

  • GC04U901850

Summaries for LOC102725220 Gene

GeneCards Summary for LOC102725220 Gene

LOC102725220 (Uncharacterized LOC102725220) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102725220 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102725220 Gene

Genomics for LOC102725220 Gene

GeneHancer (GH) Regulatory Elements for LOC102725220 Gene

Promoters and enhancers for LOC102725220 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J107283 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 0.7 -2.7 -2704 1.4 PRDM1 POLR2A RCOR1 JUND DKK2 LOC102725220 ENSG00000251081
GH04J107300 Enhancer 0.2 FANTOM5 0.4 +14.5 14474 0.4 LOC102725220 PIR49161 ENSG00000251081
GH04J107299 Enhancer 0.2 Ensembl 0.4 +13.3 13289 0.6 LOC102725220 PIR49161 ENSG00000251081
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102725220 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102725220 Gene

Genomic Locations for LOC102725220 Gene
chr4:107,286,612-107,304,537
(GRCh38/hg38)
Size:
17,926 bases
Orientation:
Plus strand

Genomic View for LOC102725220 Gene

Genes around LOC102725220 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102725220 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102725220 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102725220 Gene

Proteins for LOC102725220 Gene

Post-translational modifications for LOC102725220 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102725220 Gene

Domains & Families for LOC102725220 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102725220 Gene

Function for LOC102725220 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725220 Gene

Localization for LOC102725220 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102725220 Gene

Pathways & Interactions for LOC102725220 Gene

PathCards logo

SuperPathways for LOC102725220 Gene

No Data Available

Interacting Proteins for LOC102725220 Gene

Gene Ontology (GO) - Biological Process for LOC102725220 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102725220 Gene

Drugs & Compounds for LOC102725220 Gene

No Compound Related Data Available

Transcripts for LOC102725220 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102725220 Gene

No ASD Table

Relevant External Links for LOC102725220 Gene

GeneLoc Exon Structure for
LOC102725220

No data available for mRNA/cDNA for LOC102725220 Gene

Expression for LOC102725220 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725220 Gene

Orthologs for LOC102725220 Gene

No data available for Orthologs and Evolution for LOC102725220 Gene

Paralogs for LOC102725220 Gene

No data available for Paralogs for LOC102725220 Gene

Variants for LOC102725220 Gene

Sequence variations from dbSNP and Humsavar for LOC102725220 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000114834 -- 107,301,844(+) G/T downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000166829 -- 107,301,513(+) A/C non_coding_transcript_variant
rs10002110 -- 107,294,795(+) G/A intron_variant
rs10002228 -- 107,295,055(+) C/A/T intron_variant
rs1000267807 -- 107,295,481(+) C/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102725220 Gene

Disorders for LOC102725220 Gene

No disorders were found for LOC102725220 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725220 Gene

Publications for LOC102725220 Gene

No publications were found for LOC102725220 Gene.

No data available for External Links for LOC102725220 Gene

Products for LOC102725220 Gene

Sources for LOC102725220 Gene

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