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Aliases for LOC102725201 Gene

Subcategory (RNA class) for LOC102725201 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102725201 Gene

  • Uncharacterized LOC102725201 3

External Ids for LOC102725201 Gene

Previous GeneCards Identifiers for LOC102725201 Gene

  • GC20U900843

Summaries for LOC102725201 Gene

GeneCards Summary for LOC102725201 Gene

LOC102725201 (Uncharacterized LOC102725201) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102725201 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102725201 Gene

Genomics for LOC102725201 Gene

GeneHancer (GH) Regulatory Elements for LOC102725201 Gene

Promoters and enhancers for LOC102725201 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J035489 Promoter/Enhancer 1.2 Ensembl ENCODE 600.7 +0.2 224 2.8 NKRF ZNF121 ZNF687 RELA IKZF1 POLR2A IKZF2 SMAD5 PKNOX1 CBFB LOC102725201 ENSG00000230155 RPL36P4 ERGIC3 CEP250
GH20J035492 Promoter 0.6 Ensembl 600.7 -1.5 -1496 0.2 SCRT2 ENSG00000230155 LOC102725201 GC20P035518 CEP250
GH20J035479 Enhancer 0.7 ENCODE 0.4 +11.9 11934 0.2 AHR ZBTB33 NFKBIZ IRF2 TGIF2 ZNF205 RUNX3 TEAD1 CEBPB CTCF GDF5 CEP250 MIR1289-1 ENSG00000242507 C20orf173 NFS1 ROMO1 GDF5OS CNBD2 ENSG00000230155
GH20J035517 Enhancer 0.7 Ensembl ENCODE 0.3 -25.2 -25216 1.2 FOSL2 POLR2A FOS FOSL1 JUND GC20P035518 LOC102725201 CEP250
GH20J035506 Enhancer 0.6 Ensembl 0.4 -15.3 -15296 0.6 IKZF1 HDGF NR2F1 KLF17 HDAC2 GLIS1 HLF EGR2 GC20P035518 LOC102725201 CEP250
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102725201 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102725201 Gene

Genomic Locations for LOC102725201 Gene
chr20:35,476,374-35,491,205
(GRCh38/hg38)
Size:
14,832 bases
Orientation:
Minus strand

Genomic View for LOC102725201 Gene

Genes around LOC102725201 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102725201 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102725201 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102725201 Gene

Proteins for LOC102725201 Gene

Post-translational modifications for LOC102725201 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102725201 Gene

Domains & Families for LOC102725201 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102725201 Gene

Function for LOC102725201 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725201 Gene

Localization for LOC102725201 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102725201 Gene

Pathways & Interactions for LOC102725201 Gene

PathCards logo

SuperPathways for LOC102725201 Gene

No Data Available

Interacting Proteins for LOC102725201 Gene

Gene Ontology (GO) - Biological Process for LOC102725201 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102725201 Gene

Drugs & Compounds for LOC102725201 Gene

No Compound Related Data Available

Transcripts for LOC102725201 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102725201 Gene

No ASD Table

Relevant External Links for LOC102725201 Gene

GeneLoc Exon Structure for
LOC102725201

No data available for mRNA/cDNA for LOC102725201 Gene

Expression for LOC102725201 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725201 Gene

Orthologs for LOC102725201 Gene

No data available for Orthologs and Evolution for LOC102725201 Gene

Paralogs for LOC102725201 Gene

No data available for Paralogs for LOC102725201 Gene

Variants for LOC102725201 Gene

Sequence variations from dbSNP and Humsavar for LOC102725201 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000110351 -- 35,479,892(-) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000225122 -- 35,489,500(-) G/T genic_upstream_transcript_variant, intron_variant
rs1000547979 -- 35,488,099(-) T/A genic_upstream_transcript_variant, intron_variant
rs1000598400 -- 35,489,061(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000642128 -- 35,492,820(-) C/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102725201 Gene

Disorders for LOC102725201 Gene

No disorders were found for LOC102725201 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725201 Gene

Publications for LOC102725201 Gene

No publications were found for LOC102725201 Gene.

No data available for External Links for LOC102725201 Gene

Products for LOC102725201 Gene

Sources for LOC102725201 Gene

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