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Aliases for LOC102725180 Gene

Aliases for LOC102725180 Gene

  • Collagen Alpha-1(VII) Chain-Like 3

External Ids for LOC102725180 Gene

Previous GeneCards Identifiers for LOC102725180 Gene

  • GC19U901779

Summaries for LOC102725180 Gene

GeneCards Summary for LOC102725180 Gene

LOC102725180 (Collagen Alpha-1(VII) Chain-Like) is a Protein Coding gene.

Additional gene information for LOC102725180 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102725180 Gene

Genomics for LOC102725180 Gene

GeneHancer (GH) Regulatory Elements for LOC102725180 Gene

Promoters and enhancers for LOC102725180 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J001165 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 +0.9 949 10 SP1 CC2D1A ZFX ELF3 MNT CBFA2T2 NKRF MLLT1 ZNF121 POLR2A SBNO2 LOC102725180 DAZAP1 LOC100288123 TMEM259 PTBP1 TCF3 MED16 ENSG00000267317 MIER2
GH19J001163 Enhancer 0.7 ENCODE dbSUPER 0.4 -5.3 -5291 1.2 GABPA NR2F2 RXRA MAX ZBTB33 LOC102723798 SBNO2 LOC102725180
GH19J001164 Enhancer 0.4 ENCODE dbSUPER 0.7 -4.3 -4258 0.2 LOC102723798 LOC102725180 SBNO2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102725180 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102725180 Gene

Genomic Locations for LOC102725180 Gene
chr19:1,168,955-1,174,735
(GRCh38/hg38)
Size:
5,781 bases
Orientation:
Plus strand

Genomic View for LOC102725180 Gene

Genes around LOC102725180 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102725180 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102725180 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102725180 Gene

Proteins for LOC102725180 Gene

Post-translational modifications for LOC102725180 Gene

No Post-translational modifications

Other Protein References for LOC102725180 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC102725180 Gene

Domains & Families for LOC102725180 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102725180 Gene

Function for LOC102725180 Gene

Phenotypes From GWAS Catalog for LOC102725180 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725180 Gene

Localization for LOC102725180 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102725180 Gene

Pathways & Interactions for LOC102725180 Gene

PathCards logo

SuperPathways for LOC102725180 Gene

No Data Available

Interacting Proteins for LOC102725180 Gene

Gene Ontology (GO) - Biological Process for LOC102725180 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102725180 Gene

Drugs & Compounds for LOC102725180 Gene

No Compound Related Data Available

Transcripts for LOC102725180 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102725180 Gene

No ASD Table

Relevant External Links for LOC102725180 Gene

GeneLoc Exon Structure for
LOC102725180

No data available for mRNA/cDNA for LOC102725180 Gene

Expression for LOC102725180 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725180 Gene

Orthologs for LOC102725180 Gene

No data available for Orthologs and Evolution for LOC102725180 Gene

Paralogs for LOC102725180 Gene

No data available for Paralogs for LOC102725180 Gene

Variants for LOC102725180 Gene

Sequence variations from dbSNP and Humsavar for LOC102725180 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000059511 -- 1,168,569(+) C/G upstream_transcript_variant
rs1000090208 -- 1,168,734(+) C/T 5_prime_UTR_variant, genic_upstream_transcript_variant
rs1001072264 -- 1,167,693(+) G/A upstream_transcript_variant
rs1001155853 -- 1,167,855(+) C/T upstream_transcript_variant
rs1001840011 -- 1,168,267(+) C/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102725180 Gene

Disorders for LOC102725180 Gene

No disorders were found for LOC102725180 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725180 Gene

Publications for LOC102725180 Gene

No publications were found for LOC102725180 Gene.

No data available for External Links for LOC102725180 Gene

Products for LOC102725180 Gene

Sources for LOC102725180 Gene

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