Aliases for LOC102725080 Gene

Data sources for LOC102725080 Gene:

RNA type for LOC102725080 Gene

lncRNA

Aliases for LOC102725080 Gene

External Ids for LOC102725080 Gene

Previous GeneCards Identifiers for LOC102725080 Gene

  • GC08U901889

Summaries for LOC102725080 Gene

GeneCards Summary for LOC102725080 Gene

LOC102725080 (Uncharacterized LOC102725080) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102725080 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102725080 Gene

Genomics for LOC102725080 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102725080 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J013626 Enhancer 0.5 Ensembl ENCODE 250.7 -1.6 -1577 0.9 HNF4A SP1 LOC102725080 C8orf48 HSALNG0063552 DLC1
GH08J013629 Enhancer 0.7 FANTOM5 Ensembl ENCODE 0.7 +2.6 2566 4.2 ZNF513 MAFK HSALNG0063553 LOC102725080 HSALNG0063554 DLC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102725080 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102725080 Gene

Latest Assembly
chr8:13,628,734-13,637,671
(GRCh38/hg38)
Size:
8,938 bases
Orientation:
Plus strand

Previous Assembly
chr8:13,487,199-13,490,085
(GRCh37/hg19 by Entrez Gene)
Size:
2,887 bases
Orientation:
Plus strand

Genomic View for LOC102725080 Gene

Genes around LOC102725080 on UCSC Golden Path with GeneCards custom track
LOC102725080 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC102725080 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102725080 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102725080 Gene

Proteins for LOC102725080 Gene

Post-translational modifications for LOC102725080 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102725080 Gene

Domains & Families for LOC102725080 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102725080 Gene

Function for LOC102725080 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102725080 Gene

Localization for LOC102725080 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102725080 Gene

Pathways & Interactions for LOC102725080 Gene

PathCards logo

SuperPathways for LOC102725080 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102725080 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102725080 Gene

Drugs & Compounds for LOC102725080 Gene

No Compound Related Data Available

Transcripts for LOC102725080 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102725080 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000A76D82_9606 lncRNA 948 2

RefSeq: NR_134450,

LNCipedia: lnc-C8orf48-1:7,

URS0000EED97A_9606 lncRNA 992 1

Ensembl: ENST00000668622 (view in UCSC) ,

URS00008B6140_9606 lncRNA 1157 3

LncBook: HSALNT0133328,

LNCipedia: lnc-C8orf48-1:5,

NONCODE: NONHSAT125206.2,

URS00008B844B_9606 lncRNA 495 3

LncBook: HSALNT0133334,

LNCipedia: lnc-C8orf48-1:6,

NONCODE: NONHSAT125210.2,

URS00008BFEA6_9606 lncRNA 254 3

LncBook: HSALNT0133332,

LNCipedia: lnc-C8orf48-1:3,

NONCODE: NONHSAT125209.2,

LOC102725080 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102725080 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102725080 Gene

No ASD Table

Relevant External Links for LOC102725080 Gene

GeneLoc Exon Structure for
LOC102725080

Expression for LOC102725080 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102725080 Gene

Orthologs for LOC102725080 Gene

Evolution for LOC102725080 Gene

ENSEMBL:
Gene Tree for LOC102725080 (if available)
TreeFam:
Gene Tree for LOC102725080 (if available)

No data available for Orthologs for LOC102725080 Gene

Paralogs for LOC102725080 Gene

No data available for Paralogs for LOC102725080 Gene

Variants for LOC102725080 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC102725080 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102725080 Gene

Disorders for LOC102725080 Gene

No disorders were found for LOC102725080 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102725080 Gene

Publications for LOC102725080 Gene

No publications were found for LOC102725080 Gene.

No data available for Mastermind for LOC102725080 Gene

Products for LOC102725080 Gene

Sources for LOC102725080 Gene