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Aliases for LOC102724968 Gene

Subcategory (RNA class) for LOC102724968 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724968 Gene

  • Uncharacterized LOC102724968 3

External Ids for LOC102724968 Gene

Previous GeneCards Identifiers for LOC102724968 Gene

  • GC20U900834

Summaries for LOC102724968 Gene

GeneCards Summary for LOC102724968 Gene

LOC102724968 (Uncharacterized LOC102724968) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724968 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724968 Gene

Genomics for LOC102724968 Gene

GeneHancer (GH) Regulatory Elements for LOC102724968 Gene

Promoters and enhancers for LOC102724968 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J040561 Enhancer 1 FANTOM5 ENCODE 0.2 +56.3 56274 2.3 NFIB IKZF1 ZIC2 BRCA1 EP300 CEBPB GABPA RCOR1 SMARCB1 MAX MAFB TOP1 LOC102724968 LOC105372618
GH20J040638 Enhancer 0.6 Ensembl 0.3 -21.2 -21216 4.8 NFIB ZSCAN4 SCRT2 YBX1 DPF2 NFIC KLF17 HNF4A FOS NBN MAFB GC20P040644 LOC102724968
GH20J040607 Enhancer 0.5 VISTA 0.4 +11.1 11122 1.8 SP7 MNT CREB1 ATF2 CTCF LOC102724968 LOC105372618
GH20J040505 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.1 +112.6 112557 1.7 CBFA2T2 TFE3 SP1 POLR2A PRDM10 ZIC2 CEBPA SMARCC1 GTF2F1 MNT MAFB LOC105372618 LOC102724968
GH20J040565 Enhancer 0.7 ENCODE 0.2 +53.9 53949 0.2 SMARCA4 FOSL2 POLR2A ZIC2 ZSCAN4 MNT CHD2 JUN RCOR1 JUND LOC102724968 LOC105372618
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724968 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724968 Gene

Genomic Locations for LOC102724968 Gene
chr20:40,573,977-40,619,185
(GRCh38/hg38)
Size:
45,209 bases
Orientation:
Minus strand

Genomic View for LOC102724968 Gene

Genes around LOC102724968 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724968 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724968 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724968 Gene

Proteins for LOC102724968 Gene

Post-translational modifications for LOC102724968 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724968 Gene

Domains & Families for LOC102724968 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724968 Gene

Function for LOC102724968 Gene

Phenotypes From GWAS Catalog for LOC102724968 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724968 Gene

Localization for LOC102724968 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724968 Gene

Pathways & Interactions for LOC102724968 Gene

PathCards logo

SuperPathways for LOC102724968 Gene

No Data Available

Interacting Proteins for LOC102724968 Gene

Gene Ontology (GO) - Biological Process for LOC102724968 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724968 Gene

Drugs & Compounds for LOC102724968 Gene

No Compound Related Data Available

Transcripts for LOC102724968 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724968 Gene

No ASD Table

Relevant External Links for LOC102724968 Gene

GeneLoc Exon Structure for
LOC102724968

No data available for mRNA/cDNA for LOC102724968 Gene

Expression for LOC102724968 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724968 Gene

Orthologs for LOC102724968 Gene

No data available for Orthologs and Evolution for LOC102724968 Gene

Paralogs for LOC102724968 Gene

No data available for Paralogs for LOC102724968 Gene

Variants for LOC102724968 Gene

Sequence variations from dbSNP and Humsavar for LOC102724968 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000005736 -- 40,580,477(-) C/G/T intron_variant
rs1000065389 -- 40,642,722(-) A/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000125306 -- 40,627,331(-) A/G intron_variant
rs1000129123 -- 40,643,808(-) A/G genic_upstream_transcript_variant, intron_variant
rs1000152446 -- 40,576,541(-) A/G downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724968 Gene

Disorders for LOC102724968 Gene

No disorders were found for LOC102724968 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724968 Gene

Publications for LOC102724968 Gene

  1. Common variants at 30 loci contribute to polygenic dyslipidemia. (PMID: 19060906) Kathiresan S … Cupples LA (Nature genetics 2009) 3 58

No data available for External Links for LOC102724968 Gene

Products for LOC102724968 Gene

Sources for LOC102724968 Gene

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