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Aliases for LOC102724960 Gene

Subcategory (RNA class) for LOC102724960 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724960 Gene

  • Uncharacterized LOC102724960 3

External Ids for LOC102724960 Gene

Previous GeneCards Identifiers for LOC102724960 Gene

  • GC12U901882

Summaries for LOC102724960 Gene

GeneCards Summary for LOC102724960 Gene

LOC102724960 (Uncharacterized LOC102724960) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724960 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724960 Gene

Genomics for LOC102724960 Gene

GeneHancer (GH) Regulatory Elements for LOC102724960 Gene

Promoters and enhancers for LOC102724960 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J094472 Enhancer 0.2 Ensembl 600.7 +0.4 392 0.6 LOC102724960 ENSG00000257400
GH12J094488 Enhancer 0.8 Ensembl ENCODE 0.4 +16.3 16292 1.2 IKZF1 RFX1 IKZF2 DPF2 EED RUNX3 BCL11A BMI1 IRF4 ATF2 ENSG00000257400 LOC102724960
GH12J094532 Enhancer 0.9 Ensembl ENCODE 0.2 +60.7 60692 0.4 CC2D1A CTCF RAD21 RXRA ARID2 REST TRIM22 SMARCA5 BCLAF1 IKZF1 PLXNC1 GC12M094524 GC12P094543 LOC102724960
GH12J094535 Enhancer 0.7 Ensembl 0.2 +63.3 63292 0.8 ZIC2 RFX1 GATAD2A POLR2A FOXA2 SOX13 ZNF205 SAP130 JUND CREM PLXNC1 TMCC3 GC12P094543 GC12M094524 LOC102724960
GH12J094517 Enhancer 0.4 ENCODE 0.3 +44.9 44891 0.2 SOX13 SOX5 RN7SL483P TMCC3 GC12M094523 LOC102724960
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724960 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724960 Gene

Genomic Locations for LOC102724960 Gene
chr12:94,472,309-94,539,214
(GRCh38/hg38)
Size:
66,906 bases
Orientation:
Plus strand

Genomic View for LOC102724960 Gene

Genes around LOC102724960 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724960 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724960 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724960 Gene

Proteins for LOC102724960 Gene

Post-translational modifications for LOC102724960 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724960 Gene

Domains & Families for LOC102724960 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724960 Gene

Function for LOC102724960 Gene

Phenotypes From GWAS Catalog for LOC102724960 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724960 Gene

Localization for LOC102724960 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724960 Gene

Pathways & Interactions for LOC102724960 Gene

PathCards logo

SuperPathways for LOC102724960 Gene

No Data Available

Interacting Proteins for LOC102724960 Gene

Gene Ontology (GO) - Biological Process for LOC102724960 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724960 Gene

Drugs & Compounds for LOC102724960 Gene

No Compound Related Data Available

Transcripts for LOC102724960 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724960 Gene

No ASD Table

Relevant External Links for LOC102724960 Gene

GeneLoc Exon Structure for
LOC102724960

No data available for mRNA/cDNA for LOC102724960 Gene

Expression for LOC102724960 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724960 Gene

Orthologs for LOC102724960 Gene

No data available for Orthologs and Evolution for LOC102724960 Gene

Paralogs for LOC102724960 Gene

No data available for Paralogs for LOC102724960 Gene

Variants for LOC102724960 Gene

Sequence variations from dbSNP and Humsavar for LOC102724960 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000034367 -- 94,476,508(+) C/T intron_variant
rs1000062022 -- 94,498,575(+) A/C genic_downstream_transcript_variant, intron_variant
rs1000073776 -- 94,501,571(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000104253 -- 94,472,515(+) A/G intron_variant
rs1000123004 -- 94,507,431(+) T/C genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724960 Gene

Disorders for LOC102724960 Gene

No disorders were found for LOC102724960 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724960 Gene

Publications for LOC102724960 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58

No data available for External Links for LOC102724960 Gene

Products for LOC102724960 Gene

Sources for LOC102724960 Gene

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