Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC102724958 Gene

Subcategory (RNA class) for LOC102724958 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724958 Gene

  • Uncharacterized LOC102724958 3

External Ids for LOC102724958 Gene

Previous GeneCards Identifiers for LOC102724958 Gene

  • GC19U901822

Summaries for LOC102724958 Gene

GeneCards Summary for LOC102724958 Gene

LOC102724958 (Uncharacterized LOC102724958) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724958 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724958 Gene

Genomics for LOC102724958 Gene

GeneHancer (GH) Regulatory Elements for LOC102724958 Gene

Promoters and enhancers for LOC102724958 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J028980 Enhancer 0.5 Ensembl 0.4 +12.0 12033 0.6 PRDM1 ZNF704 ZNF488 POLR2A ZNF777 CTCF RPL9P32 LOC102724958 RNA5SP470
GH19J028987 Enhancer 0.4 Ensembl 0.4 +19.3 19333 0.4 ZNF148 ZNF366 RNA5SP470 LOC102724958
GH19J028988 Enhancer 0.4 Ensembl 0.3 +20.8 20832 1.4 ZIC2 KLF1 RNA5SP470 LOC102724958
GH19J028990 Enhancer 0.3 Ensembl 0.3 +22.3 22333 0.4 ZBTB17 RNA5SP470 LOC102724958
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724958 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724958 Gene

Genomic Locations for LOC102724958 Gene
chr19:28,968,468-28,970,672
(GRCh38/hg38)
Size:
2,205 bases
Orientation:
Plus strand

Genomic View for LOC102724958 Gene

Genes around LOC102724958 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724958 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724958 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724958 Gene

Proteins for LOC102724958 Gene

Post-translational modifications for LOC102724958 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724958 Gene

Domains & Families for LOC102724958 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724958 Gene

Function for LOC102724958 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724958 Gene

Localization for LOC102724958 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724958 Gene

Pathways & Interactions for LOC102724958 Gene

PathCards logo

SuperPathways for LOC102724958 Gene

No Data Available

Interacting Proteins for LOC102724958 Gene

Gene Ontology (GO) - Biological Process for LOC102724958 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724958 Gene

Drugs & Compounds for LOC102724958 Gene

No Compound Related Data Available

Transcripts for LOC102724958 Gene

mRNA/cDNA for LOC102724958 Gene

(3) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724958 Gene

No ASD Table

Relevant External Links for LOC102724958 Gene

GeneLoc Exon Structure for
LOC102724958

Expression for LOC102724958 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724958 Gene

Orthologs for LOC102724958 Gene

No data available for Orthologs and Evolution for LOC102724958 Gene

Paralogs for LOC102724958 Gene

No data available for Paralogs for LOC102724958 Gene

Variants for LOC102724958 Gene

Sequence variations from dbSNP and Humsavar for LOC102724958 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000667911 -- 28,970,143(+) C/T intron_variant
rs1000871707 -- 28,968,013(+) G/A/T upstream_transcript_variant
rs1001731846 -- 28,966,617(+) G/T upstream_transcript_variant
rs1001805306 -- 28,966,854(+) T/C upstream_transcript_variant
rs1002497143 -- 28,970,485(+) C/A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724958 Gene

Variant ID Type Subtype PubMed ID
esv2758753 CNV loss 17122850
esv3644110 CNV loss 21293372
nsv1059473 CNV gain 25217958
nsv1061604 CNV loss 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724958 Gene

Disorders for LOC102724958 Gene

No disorders were found for LOC102724958 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724958 Gene

Publications for LOC102724958 Gene

No publications were found for LOC102724958 Gene.

No data available for External Links for LOC102724958 Gene

Products for LOC102724958 Gene

Sources for LOC102724958 Gene

Content
Loading form....