Aliases for LOC102724957 Gene

Aliases for LOC102724957 Gene

  • Uncharacterized LOC102724957 3 5
  • Uncharacterized Protein LOC102724957 3
  • HSALNG0082864 169
  • NONHSAG007735 94
  • AC087379.2 5
  • Lnc-INSC-2 170

External Ids for LOC102724957 Gene

Summaries for LOC102724957 Gene

GeneCards Summary for LOC102724957 Gene

LOC102724957 (Uncharacterized LOC102724957) is a Protein Coding gene.

Additional gene information for LOC102724957 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102724957 Gene

Genomics for LOC102724957 Gene

GeneHancer (GH) Regulatory Elements for LOC102724957 Gene

Promoters and enhancers for LOC102724957 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J015601 Enhancer 0.8 VISTA UCNEbase Ensembl ENCODE 0.6 -2.5 -2501 2.2 LOC102724957 piR-58075 ENSG00000254789 LOC105376568 LINC02751
GH11J015621 Enhancer 1 FANTOM5 Ensembl ENCODE 0.3 +21.5 21508 11.8 CTCF RAD21 SP7 POLR2A RXRA SP1 NFE2 EZH2 ZNF10 MAFG ENSG00000254789 LOC105376568 LOC102724957 piR-53431-075
GH11J015649 Enhancer 1.1 ENCODE CraniofacialAtlas 0.2 +47.5 47498 7.1 CTCF RBPJ SMARCE1 CTBP1 MIXL1 ZNF362 ELF1 L3MBTL2 MAX RAD21 LOC105376568 piR-53431-075 LOC102724957
GH11J015634 Enhancer 0.7 FANTOM5 Ensembl ENCODE 0.3 +31.9 31909 4.8 POLR2A LOC105376568 LOC102724957 piR-53431-075
GH11J015618 Enhancer 0.5 ENCODE 0.4 +13.4 13416 0.2 RERE FOXA1 HHEX FOXA2 FOXP1 JUND ENSG00000254789 LOC105376568 LOC102724957
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724957 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724957 Gene

Genomic Locations for LOC102724957 Gene
chr11:15,605,484-15,705,376
(GRCh38/hg38)
Size:
99,893 bases
Orientation:
Plus strand
chr11:15,665,431-15,726,914
(GRCh37/hg19)
Size:
61,484 bases
Orientation:
Plus strand

Genomic View for LOC102724957 Gene

Genes around LOC102724957 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724957 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724957 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724957 Gene

Proteins for LOC102724957 Gene

Post-translational modifications for LOC102724957 Gene

No Post-translational modifications

Other Protein References for LOC102724957 Gene

No data available for DME Specific Peptides for LOC102724957 Gene

Domains & Families for LOC102724957 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102724957 Gene

Function for LOC102724957 Gene

Phenotypes From GWAS Catalog for LOC102724957 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724957 Gene

Localization for LOC102724957 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724957 Gene

Pathways & Interactions for LOC102724957 Gene

PathCards logo

SuperPathways for LOC102724957 Gene

No Data Available

Interacting Proteins for LOC102724957 Gene

Gene Ontology (GO) - Biological Process for LOC102724957 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724957 Gene

Drugs & Compounds for LOC102724957 Gene

No Compound Related Data Available

Transcripts for LOC102724957 Gene

mRNA/cDNA for LOC102724957 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(3) LncBook transcripts :
(4) NONCODE transcripts :
(8) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724957 Gene

No ASD Table

Relevant External Links for LOC102724957 Gene

GeneLoc Exon Structure for
LOC102724957

Expression for LOC102724957 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102724957 Gene

genes like me logo Genes that share expression patterns with LOC102724957: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724957 Gene

Orthologs for LOC102724957 Gene

Evolution for LOC102724957 Gene

ENSEMBL:
Gene Tree for LOC102724957 (if available)
TreeFam:
Gene Tree for LOC102724957 (if available)

No data available for Orthologs for LOC102724957 Gene

Paralogs for LOC102724957 Gene

No data available for Paralogs for LOC102724957 Gene

Variants for LOC102724957 Gene

Sequence variations from dbSNP and Humsavar for LOC102724957 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000012028 -- 15,671,078(+) C/T intron_variant
rs1000026865 -- 15,636,611(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000033168 -- 15,686,448(+) G/A intron_variant
rs1000069948 -- 15,687,742(+) T/C intron_variant
rs1000080542 -- 15,633,500(+) C/T genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724957 Gene

Variant ID Type Subtype PubMed ID
nsv469886 CNV loss 16826518
nsv518531 CNV gain 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724957 Gene

Disorders for LOC102724957 Gene

No disorders were found for LOC102724957 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724957 Gene

Publications for LOC102724957 Gene

  1. Multistage genome-wide association meta-analyses identified two new loci for bone mineral density. (PMID: 24249740) Zhang L … Deng HW (Human molecular genetics 2014) 3 56
  2. Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. (PMID: 22504420) Estrada K … Rivadeneira F (Nature genetics 2012) 3 56
  3. Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. (PMID: 19801982) Rivadeneira F … Genetic Factors for Osteoporosis (GEFOS) Consortium (Nature genetics 2009) 3 56

Products for LOC102724957 Gene

Sources for LOC102724957 Gene