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Aliases for LOC102724927 Gene

Subcategory (RNA class) for LOC102724927 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724927 Gene

  • Uncharacterized LOC102724927 3

External Ids for LOC102724927 Gene

Summaries for LOC102724927 Gene

GeneCards Summary for LOC102724927 Gene

LOC102724927 (Uncharacterized LOC102724927) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724927 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724927 Gene

Genomics for LOC102724927 Gene

GeneHancer (GH) Regulatory Elements for LOC102724927 Gene

Promoters and enhancers for LOC102724927 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J003948 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 600.7 -0.5 -489 4.2 ZNF121 PRDM1 MZF1 RNF2 ZBTB8A ZNF600 ZEB2 ZNF639 ZNF561 ZNF140 ENSG00000262185 LOC102724927 ZNF75A ZNF500 ENSG00000261938 ZNF263 ZNF213-AS1 ANKS3 CREBBP ZSCAN32
GH16J003945 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 +4.2 4164 1.8 ZNF121 ZNF600 SMARCC1 SCRT2 SP1 RCOR1 OSR2 MAX RFX5 NFIC ENSG00000262185 LOC102724927 GC16M003931
GH16J003938 Enhancer 0.8 ENCODE 0.4 +10.9 10947 1.5 CTCF ZNF121 AHR ZBTB7A PPARG KAT8 GLIS2 PKNOX1 ZNF600 PRDM10 ENSG00000262185 GC16M003931 LOC102724927
GH16J003934 Enhancer 0.4 Ensembl 0.4 +15.4 15443 0.4 PRDM10 SP1 GC16M003931 ENSG00000262185 LOC102724927
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724927 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724927 Gene

Genomic Locations for LOC102724927 Gene
chr16:3,947,609-3,950,444
(GRCh38/hg38)
Size:
2,836 bases
Orientation:
Minus strand

Genomic View for LOC102724927 Gene

Genes around LOC102724927 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724927 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724927 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724927 Gene

Proteins for LOC102724927 Gene

Post-translational modifications for LOC102724927 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724927 Gene

Domains & Families for LOC102724927 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724927 Gene

Function for LOC102724927 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724927 Gene

Localization for LOC102724927 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724927 Gene

Pathways & Interactions for LOC102724927 Gene

PathCards logo

SuperPathways for LOC102724927 Gene

No Data Available

Interacting Proteins for LOC102724927 Gene

Gene Ontology (GO) - Biological Process for LOC102724927 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724927 Gene

Drugs & Compounds for LOC102724927 Gene

No Compound Related Data Available

Transcripts for LOC102724927 Gene

mRNA/cDNA for LOC102724927 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724927 Gene

No ASD Table

Relevant External Links for LOC102724927 Gene

GeneLoc Exon Structure for
LOC102724927

Expression for LOC102724927 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724927 Gene

Orthologs for LOC102724927 Gene

No data available for Orthologs and Evolution for LOC102724927 Gene

Paralogs for LOC102724927 Gene

No data available for Paralogs for LOC102724927 Gene

Variants for LOC102724927 Gene

Sequence variations from dbSNP and Humsavar for LOC102724927 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000003508 -- 3,948,915(-) G/A/C intron_variant
rs1000636798 -- 3,951,547(-) C/G/T upstream_transcript_variant
rs1000721353 -- 3,951,809(-) G/A upstream_transcript_variant
rs1001542131 -- 3,950,575(-) C/T upstream_transcript_variant
rs1001656597 -- 3,950,429(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724927 Gene

Variant ID Type Subtype PubMed ID
esv21490 CNV gain+loss 19812545
nsv1038196 CNV gain 25217958
nsv833130 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724927 Gene

Disorders for LOC102724927 Gene

No disorders were found for LOC102724927 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724927 Gene

Publications for LOC102724927 Gene

No publications were found for LOC102724927 Gene.

No data available for External Links for LOC102724927 Gene

Products for LOC102724927 Gene

Sources for LOC102724927 Gene

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