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Aliases for LOC102724919 Gene

Subcategory (RNA class) for LOC102724919 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724919 Gene

  • Uncharacterized LOC102724919 3
  • Novel Transcript, Antisense To PDC 5
  • AL596220.1 5

External Ids for LOC102724919 Gene

Previous GeneCards Identifiers for LOC102724919 Gene

  • GC01U904128

Summaries for LOC102724919 Gene

GeneCards Summary for LOC102724919 Gene

LOC102724919 (Uncharacterized LOC102724919) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724919 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724919 Gene

Genomics for LOC102724919 Gene

GeneHancer (GH) Regulatory Elements for LOC102724919 Gene

Promoters and enhancers for LOC102724919 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J186678 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 6.7 +245.4 245440 5.2 CTCF SP7 ELF1 SP1 KLF14 MZF1 CREB1 GLIS2 PKNOX1 PRDM10 PACERR PTGS2 LOC102724919 ENSG00000228238
GH01J186428 Enhancer 0.3 Ensembl 10 -6.0 -5960 2.4 PRDM1 PDC LOC102724919 GC01P186425 GC01M186369
GH01J186440 Enhancer 0.9 Ensembl ENCODE 0.4 +7.0 7023 4 MAFK PRDM1 POLR2A ZNF512 CEBPB CHD2 JUN SP1 RFX1 NFE2 ODR4 ENSG00000273198 LOC102724919 GC01M186369 PDC
GH01J186438 Enhancer 0.3 Ensembl 0.7 +3.8 3840 1.2 PKNOX1 LOC102724919 GC01M186369
GH01J186461 Promoter 0.5 EPDnew 0.3 +26.0 25973 0.1 PDC GC01P186459 LOC102724919 ENSG00000273198
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724919 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724919 Gene

Genomic Locations for LOC102724919 Gene
chr1:186,435,161-186,470,291
(GRCh38/hg38)
Size:
35,131 bases
Orientation:
Plus strand

Genomic View for LOC102724919 Gene

Genes around LOC102724919 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724919 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724919 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724919 Gene

Proteins for LOC102724919 Gene

Post-translational modifications for LOC102724919 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724919 Gene

Domains & Families for LOC102724919 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724919 Gene

Function for LOC102724919 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724919 Gene

Localization for LOC102724919 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724919 Gene

Pathways & Interactions for LOC102724919 Gene

PathCards logo

SuperPathways for LOC102724919 Gene

No Data Available

Interacting Proteins for LOC102724919 Gene

Gene Ontology (GO) - Biological Process for LOC102724919 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724919 Gene

Drugs & Compounds for LOC102724919 Gene

No Compound Related Data Available

Transcripts for LOC102724919 Gene

mRNA/cDNA for LOC102724919 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724919 Gene

No ASD Table

Relevant External Links for LOC102724919 Gene

GeneLoc Exon Structure for
LOC102724919

Expression for LOC102724919 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724919 Gene

Orthologs for LOC102724919 Gene

Evolution for LOC102724919 Gene

ENSEMBL:
Gene Tree for LOC102724919 (if available)
TreeFam:
Gene Tree for LOC102724919 (if available)

No data available for Orthologs for LOC102724919 Gene

Paralogs for LOC102724919 Gene

No data available for Paralogs for LOC102724919 Gene

Variants for LOC102724919 Gene

Sequence variations from dbSNP and Humsavar for LOC102724919 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000058611 -- 186,466,543(+) T/C intron_variant
rs1000070608 -- 186,442,061(+) A/G intron_variant
rs1000106181 -- 186,452,461(+) C/T intron_variant
rs1000272649 -- 186,461,730(+) T/G intron_variant
rs1000310511 -- 186,435,654(+) A/C intron_variant

Variation tolerance for LOC102724919 Gene

Gene Damage Index Score: 7.73; 83.15% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for LOC102724919 Gene

Disorders for LOC102724919 Gene

No disorders were found for LOC102724919 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724919 Gene

Publications for LOC102724919 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for LOC102724919 Gene

Products for LOC102724919 Gene

Sources for LOC102724919 Gene

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