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Aliases for LOC102724907 Gene

Subcategory (RNA class) for LOC102724907 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724907 Gene

  • Uncharacterized LOC102724907 3

External Ids for LOC102724907 Gene

Previous GeneCards Identifiers for LOC102724907 Gene

  • GC16U901673
  • GC16M050735

Summaries for LOC102724907 Gene

GeneCards Summary for LOC102724907 Gene

LOC102724907 (Uncharacterized LOC102724907) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC102724907 include Cylindromatosis, Familial and Trichoepithelioma, Multiple Familial, 2.

Additional gene information for LOC102724907 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724907 Gene

Genomics for LOC102724907 Gene

GeneHancer (GH) Regulatory Elements for LOC102724907 Gene

Promoters and enhancers for LOC102724907 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J050740 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 -1.7 -1670 7.7 HDGF SP1 ZFX ELF3 MNT SIX5 ZNF148 NKRF ZNF687 ZSCAN21 CYLD ENSG00000261644 LOC102724907 NOD2 TENT4B SNX20 BRD7 ADCY7 MIR3181 ENSG00000260616
GH16J050735 Enhancer 1 Ensembl ENCODE 0.4 +6.1 6114 3 SP1 ZNF687 RELA CREM MLLT1 ZBED1 IKZF1 PRDM10 BACH1 IKZF2 SNX20 NOD2 LOC102724907 ENSG00000261644 CYLD ENSG00000270120
GH16J050749 Promoter/Enhancer 0.7 Ensembl dbSUPER 0.4 -7.2 -7186 0.4 SNX20 BRD7 LOC102724907 ENSG00000261644 CYLD ENSG00000260616
GH16J050738 Enhancer 0.4 Ensembl 0.7 +3.7 3714 0.6 NRF1 IKZF1 SNX20 LOC102724907 ENSG00000261644 CYLD ENSG00000270120
GH16J050756 Enhancer 0.5 Ensembl dbSUPER 0.4 -14.1 -14086 1.8 POLR2A SNX20 BRD7 NOD2 ENSG00000205414 LOC102724907 ENSG00000261644 CYLD ENSG00000260616
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724907 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724907 Gene

Genomic Locations for LOC102724907 Gene
chr16:50,734,702-50,742,815
(GRCh38/hg38)
Size:
8,114 bases
Orientation:
Minus strand

Genomic View for LOC102724907 Gene

Genes around LOC102724907 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724907 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724907 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724907 Gene

Proteins for LOC102724907 Gene

Post-translational modifications for LOC102724907 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724907 Gene

Domains & Families for LOC102724907 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724907 Gene

Function for LOC102724907 Gene

Phenotypes From GWAS Catalog for LOC102724907 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724907 Gene

Localization for LOC102724907 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724907 Gene

Pathways & Interactions for LOC102724907 Gene

PathCards logo

SuperPathways for LOC102724907 Gene

No Data Available

Interacting Proteins for LOC102724907 Gene

Gene Ontology (GO) - Biological Process for LOC102724907 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724907 Gene

Drugs & Compounds for LOC102724907 Gene

No Compound Related Data Available

Transcripts for LOC102724907 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724907 Gene

No ASD Table

Relevant External Links for LOC102724907 Gene

GeneLoc Exon Structure for
LOC102724907

No data available for mRNA/cDNA for LOC102724907 Gene

Expression for LOC102724907 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724907 Gene

Orthologs for LOC102724907 Gene

No data available for Orthologs and Evolution for LOC102724907 Gene

Paralogs for LOC102724907 Gene

No data available for Paralogs for LOC102724907 Gene

Variants for LOC102724907 Gene

Sequence variations from dbSNP and Humsavar for LOC102724907 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs886052050 uncertain-significance, Spiegler-Brooke syndrome, Trichoepithelioma multiple familial 2, Cylindromatosis, familial 50,742,099(-) G/C intron_variant
rs886052051 uncertain-significance, Spiegler-Brooke syndrome, Trichoepithelioma multiple familial 2, Cylindromatosis, familial 50,744,829(-) A/G upstream_transcript_variant
rs1000058328 -- 50,735,003(-) T/C non_coding_transcript_variant
rs1000122348 -- 50,742,688(-) G/A non_coding_transcript_variant
rs1000259826 -- 50,743,568(-) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724907 Gene

Disorders for LOC102724907 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LOC102724907 Gene - From: GeneCards

Disorder Aliases PubMed IDs
cylindromatosis, familial
  • ancell-spiegler cylindromas
trichoepithelioma, multiple familial, 2
  • mft2
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC102724907: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724907 Gene

Publications for LOC102724907 Gene

No publications were found for LOC102724907 Gene.

No data available for External Links for LOC102724907 Gene

Products for LOC102724907 Gene

Sources for LOC102724907 Gene

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