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Aliases for LOC102724808 Gene

Subcategory (RNA class) for LOC102724808 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724808 Gene

  • Uncharacterized LOC102724808 3

External Ids for LOC102724808 Gene

Previous GeneCards Identifiers for LOC102724808 Gene

  • GC03U902106

Summaries for LOC102724808 Gene

GeneCards Summary for LOC102724808 Gene

LOC102724808 (Uncharacterized LOC102724808) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC102724808 include Autosomal Dominant Optic Atrophy Plus Syndrome and Mitochondrial Dna Depletion Syndrome 14.

Additional gene information for LOC102724808 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724808 Gene

Genomics for LOC102724808 Gene

GeneHancer (GH) Regulatory Elements for LOC102724808 Gene

Promoters and enhancers for LOC102724808 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J193688 Enhancer 1.1 Ensembl ENCODE 0.4 -5.1 -5143 1.1 CC2D1A ZKSCAN8 CBFA2T2 MLLT1 TRIM24 SMARCA4 MTA1 GMEB1 DPF2 IKZF1 ATP13A4 ENSG00000232874 HES1 LOC102724808 RN7SL447P OPA1
GH03J193659 Enhancer 1.1 Ensembl ENCODE 0.3 +22.4 22379 2.1 ZFX CC2D1A ZKSCAN8 CBFA2T2 ZNF148 MLLT1 GTF2F1 BACH1 TRIM24 ZNF639 ATP13A4 OPA1-AS1 ENSG00000236297 LOC102724808 OPA1
GH03J193710 Enhancer 1.2 Ensembl ENCODE 0.3 -28.2 -28167 2.9 ZNF652 ELF3 MNT CEBPG RERE AHR NCOA3 MYC TFE3 SP1 LSG1 OPA1-AS1 LRRC15 GP5 ATP13A4 ENSG00000236297 RN7SL447P LOC102724808
GH03J193662 Enhancer 1 Ensembl ENCODE 0.3 +20.2 20248 1.6 SP1 SMARCA4 RXRA DPF2 IKZF1 ZNF512 CEBPA ATF1 LEF1 HDAC1 ATP13A4 OPA1-AS1 LOC102724808 OPA1
GH03J193656 Enhancer 1 Ensembl ENCODE 0.3 +26.2 26159 2.6 CSDE1 BACH1 ZNF639 SMARCA4 DPF2 EP300 SCRT2 MGA TCF12 CTBP1 ATP13A4 OPA1-AS1 OPA1 LOC102724808
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724808 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724808 Gene

Genomic Locations for LOC102724808 Gene
chr3:193,647,195-193,683,261
(GRCh38/hg38)
Size:
36,067 bases
Orientation:
Minus strand

Genomic View for LOC102724808 Gene

Genes around LOC102724808 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724808 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724808 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724808 Gene

Proteins for LOC102724808 Gene

Post-translational modifications for LOC102724808 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724808 Gene

Domains & Families for LOC102724808 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724808 Gene

Function for LOC102724808 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724808 Gene

Localization for LOC102724808 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724808 Gene

Pathways & Interactions for LOC102724808 Gene

PathCards logo

SuperPathways for LOC102724808 Gene

No Data Available

Interacting Proteins for LOC102724808 Gene

Gene Ontology (GO) - Biological Process for LOC102724808 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724808 Gene

Drugs & Compounds for LOC102724808 Gene

No Compound Related Data Available

Transcripts for LOC102724808 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724808 Gene

No ASD Table

Relevant External Links for LOC102724808 Gene

GeneLoc Exon Structure for
LOC102724808

No data available for mRNA/cDNA for LOC102724808 Gene

Expression for LOC102724808 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724808 Gene

Orthologs for LOC102724808 Gene

No data available for Orthologs and Evolution for LOC102724808 Gene

Paralogs for LOC102724808 Gene

No data available for Paralogs for LOC102724808 Gene

Variants for LOC102724808 Gene

Sequence variations from dbSNP and Humsavar for LOC102724808 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs111688935 benign, likely-benign, not specified, Optic Atrophy, Dominant 193,665,007(-) C/G genic_downstream_transcript_variant, intron_variant
rs117475774 benign, likely-benign, not specified, Optic Atrophy, Dominant 193,667,270(-) G/A/C downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs121908376 pathogenic, Autosomal dominant optic atrophy plus syndrome 193,648,109(-) A/G genic_downstream_transcript_variant, intron_variant
rs144898877 benign, likely-benign, not specified, not provided 193,667,177(-) A/G downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1553881180 uncertain-significance, not specified, not provided 193,654,992(-) T/C genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724808 Gene

Disorders for LOC102724808 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LOC102724808 Gene - From: GeneCards

Disorder Aliases PubMed IDs
autosomal dominant optic atrophy plus syndrome
  • optic atrophy with or without deafness, ophthalmoplegia, myopathy, ataxia, and neuropathy
mitochondrial dna depletion syndrome 14
  • mtdps14
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC102724808: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724808 Gene

Publications for LOC102724808 Gene

No publications were found for LOC102724808 Gene.

No data available for External Links for LOC102724808 Gene

Products for LOC102724808 Gene

Sources for LOC102724808 Gene

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