Aliases for LOC102724740 Gene

Subcategory (RNA class) for LOC102724740 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724740 Gene

  • Uncharacterized LOC102724740 3

External Ids for LOC102724740 Gene

Previous GeneCards Identifiers for LOC102724740 Gene

  • GC21U900600

Summaries for LOC102724740 Gene

GeneCards Summary for LOC102724740 Gene

LOC102724740 (Uncharacterized LOC102724740) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724740 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102724740 Gene

Genomics for LOC102724740 Gene

GeneHancer (GH) Regulatory Elements for LOC102724740 Gene

Promoters and enhancers for LOC102724740 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J039019 Enhancer 0.2 dbSUPER 750.6 -0.5 -516 0.7 LOC102724740 piR-42491-144 ENSG00000237609 ENSG00000235888
GH21J039020 Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.6 -3.0 -3038 3.6 CTCF MLX RBPJ POLR2A NR2F1 NR2F6 MIXL1 RAD21 ZNF652 RERE LOC102724740 ENSG00000237609 ENSG00000235888
GH21J039014 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.6 +2.7 2728 4.9 MLX HLF ELF3 IKZF1 CEBPA IKZF2 RXRB CEBPB JUN JUND piR-54300 ETS2 LOC102724740 piR-42491-144 LOC105372803 lnc-ETS2-4 ENSG00000235888
GH21J038983 Promoter/Enhancer 2.3 VISTA FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +29.7 29666 11.6 ZBTB6 MLX RBPJ SMARCE1 CTBP1 MIXL1 RUNX1 ZNF362 MYC CC2D1A HMGN1 RNF6P1 MYL6P2 DSCR10 ENSG00000270835 DSCR4 DSCR4-IT1 BRWD1 GET1 DSCR8
GH21J039002 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +13.7 13665 5.5 RAD21 TEAD4 SP1 MLLT1 SMARCA4 IKZF1 CREB1 ZIC2 RFX1 ATF1 lnc-ETS2-4 LOC102724740 LINC01700 ENSG00000235888
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724740 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724740 Gene

Genomic Locations for LOC102724740 Gene
chr21:38,988,389-39,019,256
(GRCh38/hg38)
Size:
30,868 bases
Orientation:
Minus strand

Genomic View for LOC102724740 Gene

Genes around LOC102724740 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724740 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724740 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724740 Gene

Proteins for LOC102724740 Gene

Post-translational modifications for LOC102724740 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724740 Gene

Domains & Families for LOC102724740 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102724740 Gene

Function for LOC102724740 Gene

Phenotypes From GWAS Catalog for LOC102724740 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724740 Gene

Localization for LOC102724740 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724740 Gene

Pathways & Interactions for LOC102724740 Gene

PathCards logo

SuperPathways for LOC102724740 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102724740 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724740 Gene

Drugs & Compounds for LOC102724740 Gene

No Compound Related Data Available

Transcripts for LOC102724740 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724740 Gene

No ASD Table

Relevant External Links for LOC102724740 Gene

GeneLoc Exon Structure for
LOC102724740

No data available for mRNA/cDNA for LOC102724740 Gene

Expression for LOC102724740 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724740 Gene

Orthologs for LOC102724740 Gene

No data available for Orthologs and Evolution for LOC102724740 Gene

Paralogs for LOC102724740 Gene

No data available for Paralogs for LOC102724740 Gene

Variants for LOC102724740 Gene

Sequence variations from dbSNP and Humsavar for LOC102724740 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000021047 -- 38,995,502(-) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000158700 -- 39,006,749(-) T/G genic_upstream_transcript_variant, non_coding_transcript_variant
rs1000177531 -- 39,004,448(-) G/C genic_upstream_transcript_variant, intron_variant
rs1000201248 -- 39,010,759(-) C/G genic_upstream_transcript_variant, intron_variant
rs1000288378 -- 38,999,428(-) G/C genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724740 Gene

Disorders for LOC102724740 Gene

No disorders were found for LOC102724740 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724740 Gene

Publications for LOC102724740 Gene

  1. Novel genes identified in a high-density genome wide association study for nicotine dependence. (PMID: 17158188) Bierut LJ … Ballinger DG (Human molecular genetics 2007) 3 56

No data available for External Links for LOC102724740 Gene

Products for LOC102724740 Gene

Sources for LOC102724740 Gene