LOC102724719 Gene (RNA Gene)

Uncharacterized LOC102724719

GC10M051062
GIFtS:
10
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Aliases for LOC102724719 Gene

Subcategory (RNA class) for LOC102724719 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC102724719 Gene

  • Uncharacterized LOC102724719 3
  • Novel Transcript 5
  • NONHSAG005914.2 91
  • HSALNG0077985 164
  • AL731537.1 5
  • Lnc-A1CF-1 165

External Ids for LOC102724719 Gene

Summaries for LOC102724719 Gene

GeneCards Summary for LOC102724719 Gene

LOC102724719 (Uncharacterized LOC102724719) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102724719 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102724719 Gene

Genomics for LOC102724719 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC102724719 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J050990 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.9 +76.3 76270 5 PRDM10 ZNF629 ZNF692 PRDM1 ZIC2 ZSCAN4 PATZ1 ZNF501 EZH2 ZNF600 PRKG1 lnc-A1CF-8 BEND3P1 LOC102724719 CSTF2T
GH10J051073 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 7.6 -6.6 -6648 4.4 PRDM10 ZNF692 PRDM1 ZIC2 PATZ1 ZNF501 POLR2A ZNF600 ZNF341 CEBPA PRKG1 ENSG00000231132 LOC102724719 piR-46002-060 CSTF2T
GH10J051033 Enhancer 0.6 Ensembl 20.2 +34.0 33952 3.2 TEAD4 FOXA1 CTBP1 ESRRA ZNF217 CUX1 GATA3 DPF2 RCOR1 PRDM6 LOC102724719 PRKG1 lnc-A1CF-8 CSTF2T
GH10J051244 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 9.7 -177.1 -177148 5 PRDM10 ZNF629 PRDM1 ZNF501 ZNF239 ZNF600 ZBTB44 TCF7L2 ZNF10 ZXDB ENSG00000231132 LOC102724719 piR-39341-040 PRKG1 CSTF2T
GH10J051117 Enhancer 0.6 Ensembl ENCODE 18.1 -49.2 -49200 3.5 NR2F2 EGR2 PKNOX1 LOC102724719 ASAH2B PRKG1 piR-46002-060 CSTF2T
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724719 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102724719 Gene

Genomic Locations for LOC102724719 Gene
chr10:51,062,579-51,068,553
(GRCh38/hg38)
Size:
5,975 bases
Orientation:
Minus strand
chr10:52,822,339-52,828,313
(GRCh37/hg19)
Size:
5,975 bases
Orientation:
Minus strand

Genomic View for LOC102724719 Gene

Genes around LOC102724719 on UCSC Golden Path with GeneCards custom track
LOC102724719 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC102724719 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724719 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC102724719 Gene

Proteins for LOC102724719 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC102724719 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724719 Gene

Domains & Families for LOC102724719 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102724719 Gene

Function for LOC102724719 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC102724719 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724719 Gene

Localization for LOC102724719 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724719 Gene

Pathways & Interactions for LOC102724719 Gene

PathCards logo

SuperPathways for LOC102724719 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102724719 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102724719 Gene

Drugs & Compounds for LOC102724719 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC102724719 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102724719 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000CE18F_9606 lncRNA 421 4

Ensembl: ENST00000343087 (view in UCSC) ,

LncBook: HSALNT0162694,

LNCipedia: lnc-A1CF-1:1,

NONCODE: NONHSAT013406.2,

URS000075E5A0_9606 lncRNA 420 2

RefSeq: NR_120678,

LNCipedia: lnc-A1CF-1:2,

LOC102724719 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102724719 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724719 Gene

No ASD Table

Relevant External Links for LOC102724719 Gene

GeneLoc Exon Structure for
LOC102724719

Expression for LOC102724719 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC102724719 Gene

mRNA expression in normal human tissues for LOC102724719 Gene
mRNA expression by GTEx for LOC102724719 Gene
genes like me logo Genes that share expression patterns with LOC102724719: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724719 Gene

Orthologs for LOC102724719 Gene

Evolution for LOC102724719 Gene

ENSEMBL:
Gene Tree for LOC102724719 (if available)
TreeFam:
Gene Tree for LOC102724719 (if available)

No data available for Orthologs for LOC102724719 Gene

Paralogs for LOC102724719 Gene

No data available for Paralogs for LOC102724719 Gene

Variants for LOC102724719 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC102724719 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC102724719 Gene

Variant ID Type Subtype PubMed ID
nsv1036645 CNV gain 25217958
nsv831873 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC102724719 Gene

Disorders for LOC102724719 Gene

No disorders were found for LOC102724719 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724719 Gene

Publications for LOC102724719 Gene

No publications were found for LOC102724719 Gene.

No data available for Mastermind for LOC102724719 Gene

Products for LOC102724719 Gene

Sources for LOC102724719 Gene