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Aliases for LOC102724719 Gene

Subcategory (RNA class) for LOC102724719 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724719 Gene

  • Uncharacterized LOC102724719 3
  • Novel Transcript 5
  • AL731537.1 5

External Ids for LOC102724719 Gene

Summaries for LOC102724719 Gene

GeneCards Summary for LOC102724719 Gene

LOC102724719 (Uncharacterized LOC102724719) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724719 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724719 Gene

Genomics for LOC102724719 Gene

GeneHancer (GH) Regulatory Elements for LOC102724719 Gene

Promoters and enhancers for LOC102724719 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J051067 Enhancer 0.2 Ensembl 600.7 +1.3 1252 0.6 LOC102724719 PRKG1
GH10J050990 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.9 +76.2 76171 4.8 ZSCAN21 SP7 PRDM1 GLIS2 PKNOX1 ZBTB8A ZNF600 PRDM10 ZIC2 ZSCAN4 PRKG1 BEND3P1 LOC102724719
GH10J051073 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 7.6 -6.8 -6848 4.8 ZSCAN21 PRDM1 MZF1 GLIS2 POLR2A PKNOX1 ZBTB8A ZNF600 PRDM10 ZIC2 PRKG1 ENSG00000231132 LOC102724719 GC10P051149
GH10J051033 Enhancer 0.6 Ensembl 20.2 +34.0 33952 3.2 SP1 CTBP1 ESRRA ZNF217 DPF2 CUX1 GATA3 FOXA1 RCOR1 PRDM6 LOC102724719 PRKG1
GH10J051116 Enhancer 0.6 Ensembl ENCODE 18.1 -49.5 -49500 2.9 PKNOX1 NR2F2 EGR2 LOC102724719 ASAH2B PRKG1 GC10P051149
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724719 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724719 Gene

Genomic Locations for LOC102724719 Gene
chr10:51,062,579-51,068,553
(GRCh38/hg38)
Size:
5,975 bases
Orientation:
Minus strand
chr10:52,822,339-52,828,313
(GRCh37/hg19)
Size:
5,975 bases
Orientation:
Minus strand

Genomic View for LOC102724719 Gene

Genes around LOC102724719 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724719 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724719 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724719 Gene

Proteins for LOC102724719 Gene

Post-translational modifications for LOC102724719 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724719 Gene

Domains & Families for LOC102724719 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724719 Gene

Function for LOC102724719 Gene

Phenotypes From GWAS Catalog for LOC102724719 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724719 Gene

Localization for LOC102724719 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724719 Gene

Pathways & Interactions for LOC102724719 Gene

PathCards logo

SuperPathways for LOC102724719 Gene

No Data Available

Interacting Proteins for LOC102724719 Gene

Gene Ontology (GO) - Biological Process for LOC102724719 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724719 Gene

Drugs & Compounds for LOC102724719 Gene

No Compound Related Data Available

Transcripts for LOC102724719 Gene

mRNA/cDNA for LOC102724719 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724719 Gene

No ASD Table

Relevant External Links for LOC102724719 Gene

GeneLoc Exon Structure for
LOC102724719

Expression for LOC102724719 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724719 Gene

Orthologs for LOC102724719 Gene

Evolution for LOC102724719 Gene

ENSEMBL:
Gene Tree for LOC102724719 (if available)
TreeFam:
Gene Tree for LOC102724719 (if available)

No data available for Orthologs for LOC102724719 Gene

Paralogs for LOC102724719 Gene

No data available for Paralogs for LOC102724719 Gene

Variants for LOC102724719 Gene

Sequence variations from dbSNP and Humsavar for LOC102724719 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000135169 -- 51,066,877(-) T/C intron_variant
rs1000826508 -- 51,064,069(-) C/G/T intron_variant
rs1000931040 -- 51,068,988(-) A/G upstream_transcript_variant
rs1000986646 -- 51,069,209(-) A/G upstream_transcript_variant
rs1001424013 -- 51,068,540(-) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724719 Gene

Variant ID Type Subtype PubMed ID
nsv1036645 CNV gain 25217958
nsv831873 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724719 Gene

Disorders for LOC102724719 Gene

No disorders were found for LOC102724719 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724719 Gene

Publications for LOC102724719 Gene

No publications were found for LOC102724719 Gene.

No data available for External Links for LOC102724719 Gene

Products for LOC102724719 Gene

Sources for LOC102724719 Gene

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