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Aliases for LOC102724659 Gene

Subcategory (RNA class) for LOC102724659 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724659 Gene

  • Uncharacterized LOC102724659 3
  • Novel Transcript 5
  • AL953897.1 5

External Ids for LOC102724659 Gene

Summaries for LOC102724659 Gene

GeneCards Summary for LOC102724659 Gene

LOC102724659 (Uncharacterized LOC102724659) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724659 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724659 Gene

Genomics for LOC102724659 Gene

GeneHancer (GH) Regulatory Elements for LOC102724659 Gene

Promoters and enhancers for LOC102724659 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J011780 Enhancer 0.5 FANTOM5 dbSUPER 600.7 -1.4 -1372 0.1 ADNP LOC102724659 PIR55960 GC01M011790 C1orf167
GH01J011856 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.8 -78.7 -78698 3 ELF3 RERE AHR TFE3 NCOA6 SP7 PPARG SP5 PRDM1 ZNF384 NPPB NPPA-AS1 RNU5E-1 RNU5E-4P LOC102724659 C1orf167 KIAA2013 MFN2 MTHFR NPPA
GH01J011879 Enhancer 1.6 VISTA FANTOM5 ENCODE dbSUPER 10.2 -102.4 -102391 4.1 SP1 CC2D1A ZFX ZKSCAN8 CBFA2T2 ZNF148 GTF2F1 CDC5L BACH1 TRIM24 PLOD1 KIAA2013 NPPB RNU5E-1 RNU5E-4P NPPA-AS1 LOC102724659 C1orf167 ENSG00000224904 ENSG00000226849
GH01J011707 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.3 +71.2 71219 2.4 ZKSCAN8 CBFA2T2 NFIB TRIM24 ZNF548 SMARCA4 MTA1 GLIS2 GMEB1 IKZF1 EXOSC10 TARDBP AGTRAP ENSG00000226849 MTOR FBXO2 FBXO44 C1orf167 LOC102724659 MTHFR
GH01J011711 Enhancer 0.8 Ensembl ENCODE 11.3 +68.3 68318 0.6 CC2D1A CTCF REST NRF1 RAD21 TRIM28 SMC3 ZNF189 MYNN ZNF143 AGTRAP FBXO44 FBXO2 C1orf167 LOC102724659 C1orf127 GC01P011722 MAD2L2 DRAXIN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724659 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724659 Gene

Genomic Locations for LOC102724659 Gene
chr1:11,777,077-11,779,619
(GRCh38/hg38)
Size:
2,543 bases
Orientation:
Minus strand
chr1:11,837,134-11,839,676
(GRCh37/hg19)
Size:
2,543 bases
Orientation:
Minus strand

Genomic View for LOC102724659 Gene

Genes around LOC102724659 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724659 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724659 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724659 Gene

Proteins for LOC102724659 Gene

Post-translational modifications for LOC102724659 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724659 Gene

Domains & Families for LOC102724659 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724659 Gene

Function for LOC102724659 Gene

Phenotypes From GWAS Catalog for LOC102724659 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724659 Gene

Localization for LOC102724659 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724659 Gene

Pathways & Interactions for LOC102724659 Gene

PathCards logo

SuperPathways for LOC102724659 Gene

No Data Available

Interacting Proteins for LOC102724659 Gene

Gene Ontology (GO) - Biological Process for LOC102724659 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724659 Gene

Drugs & Compounds for LOC102724659 Gene

No Compound Related Data Available

Transcripts for LOC102724659 Gene

mRNA/cDNA for LOC102724659 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724659 Gene

No ASD Table

Relevant External Links for LOC102724659 Gene

GeneLoc Exon Structure for
LOC102724659

Expression for LOC102724659 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724659 Gene

Orthologs for LOC102724659 Gene

Evolution for LOC102724659 Gene

ENSEMBL:
Gene Tree for LOC102724659 (if available)
TreeFam:
Gene Tree for LOC102724659 (if available)

No data available for Orthologs for LOC102724659 Gene

Paralogs for LOC102724659 Gene

No data available for Paralogs for LOC102724659 Gene

Variants for LOC102724659 Gene

Sequence variations from dbSNP and Humsavar for LOC102724659 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000460504 -- 11,780,771(-) A/G upstream_transcript_variant
rs1000767098 -- 11,781,522(-) C/T upstream_transcript_variant
rs1001335536 -- 11,781,155(-) A/G upstream_transcript_variant
rs1001578802 -- 11,780,306(-) C/A upstream_transcript_variant
rs1001916063 -- 11,781,452(-) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724659 Gene

Disorders for LOC102724659 Gene

No disorders were found for LOC102724659 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724659 Gene

Publications for LOC102724659 Gene

  1. Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease. (PMID: 23824729) van Meurs JB … Ahmadi KR (The American journal of clinical nutrition 2013) 3 58

No data available for External Links for LOC102724659 Gene

Products for LOC102724659 Gene

Sources for LOC102724659 Gene

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