Aliases for LOC102724596 Gene

Data sources for LOC102724596 Gene:

RNA type for LOC102724596 Gene

lncRNA

Aliases for LOC102724596 Gene

External Ids for LOC102724596 Gene

Summaries for LOC102724596 Gene

GeneCards Summary for LOC102724596 Gene

LOC102724596 (Uncharacterized LOC102724596) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102724596 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102724596 Gene

Genomics for LOC102724596 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102724596 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724596 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102724596 Gene

Latest Assembly
chr17:49,361,160-49,380,094
(GRCh38/hg38)
Size:
18,935 bases
Orientation:
Plus strand

Previous Assembly
chr17:47,438,527-47,457,456
(GRCh37/hg19 by Entrez Gene)
Size:
18,930 bases
Orientation:
Plus strand

Genomic View for LOC102724596 Gene

Genes around LOC102724596 on UCSC Golden Path with GeneCards custom track
LOC102724596 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC102724596 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724596 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724596 Gene

Proteins for LOC102724596 Gene

Post-translational modifications for LOC102724596 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724596 Gene

Domains & Families for LOC102724596 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102724596 Gene

Function for LOC102724596 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724596 Gene

Localization for LOC102724596 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724596 Gene

Pathways & Interactions for LOC102724596 Gene

PathCards logo

SuperPathways for LOC102724596 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102724596 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102724596 Gene

Drugs & Compounds for LOC102724596 Gene

No Compound Related Data Available

Transcripts for LOC102724596 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102724596 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075B61F_9606 lncRNA 563 4

RefSeq: NR_110883,

LncBook: HSALNT0242152,

LNCipedia: lnc-NGFR-3:4,

NONCODE: NONHSAT175332.1,

URS00003A6979_9606 lncRNA 548 4

RefSeq: NR_110884,

LncBook: HSALNT0242146,

LNCipedia: lnc-NGFR-3:1,

NONCODE: NONHSAT054528.2,

URS000075C492_9606 lncRNA 627 2

RefSeq: NR_110882,

LNCipedia: lnc-NGFR-3:5,

URS0000D5B7DB_9606 lncRNA 11827 2

LncBook: HSALNT0242154,

LNCipedia: lnc-NGFR-3:18,

URS0000D57700_9606 lncRNA 11732 2

LncBook: HSALNT0242150,

LNCipedia: lnc-NGFR-3:14,

LOC102724596 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102724596 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724596 Gene

No ASD Table

Relevant External Links for LOC102724596 Gene

GeneLoc Exon Structure for
LOC102724596

Expression for LOC102724596 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC102724596 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC102724596

genes like me logo Genes that share expression patterns with LOC102724596: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724596 Gene

Orthologs for LOC102724596 Gene

No data available for Orthologs and Evolution for LOC102724596 Gene

Paralogs for LOC102724596 Gene

No data available for Paralogs for LOC102724596 Gene

Variants for LOC102724596 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC102724596 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC102724596 Gene

Variant ID Type Subtype PubMed ID
nsv1112712 CNV deletion 24896259
nsv1118765 CNV deletion 24896259
nsv526307 CNV gain 19592680

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC102724596 Gene

Disorders for LOC102724596 Gene

No disorders were found for LOC102724596 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724596 Gene

Publications for LOC102724596 Gene

  1. A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation. (PMID: 22829776) Coviello AD … Perry JR (PLoS genetics 2012) 3
  2. Genome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21. (PMID: 21602798) Haiman CA … Henderson BE (Nature genetics 2011) 3
  3. Genome-wide association study identifies eight loci associated with blood pressure. (PMID: 19430483) Newton-Cheh C … Munroe PB (Nature genetics 2009) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LOC102724596 Gene

Products for LOC102724596 Gene

Sources for LOC102724596 Gene