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Aliases for LOC102724557 Gene

Subcategory (RNA class) for LOC102724557 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724557 Gene

  • Uncharacterized LOC102724557 3

External Ids for LOC102724557 Gene

Previous GeneCards Identifiers for LOC102724557 Gene

  • GC05U901996

Summaries for LOC102724557 Gene

GeneCards Summary for LOC102724557 Gene

LOC102724557 (Uncharacterized LOC102724557) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724557 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724557 Gene

Genomics for LOC102724557 Gene

GeneHancer (GH) Regulatory Elements for LOC102724557 Gene

Promoters and enhancers for LOC102724557 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J079811 Enhancer 0.9 ENCODE 0.4 +9.9 9866 0.4 CC2D1A CBFA2T2 ZNF148 GTF2F1 CDC5L TRIM24 EGR1 SMARCA4 MTA1 GMEB1 ENSG00000250258 LOC102724557
GH05J079770 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -29.9 -29902 1 ZSCAN21 SP7 PRDM1 PKNOX1 ZIC2 ZEB2 ZNF639 ZNF629 PATZ1 ZNF692 ENSG00000250258 GC05P079745 LOC102724557 CMYA5
GH05J079795 Enhancer 0.8 Ensembl dbSUPER 0.4 -5.3 -5283 0.2 NFIB NFIC CEBPB ZNF660 NFIA GLIS1 ZMYM3 HLF SMARCA5 ENSG00000250258 LOC102724557 GC05P079745 CMYA5
GH05J079774 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -27.0 -26979 1.2 CTCF ZNF24 SP1 RXRA IKZF1 REST RXRB SOX13 ZNF184 ZFHX2 ENSG00000250258 GC05P079745 LOC102724557 CMYA5
GH05J079845 Enhancer 1 Ensembl ENCODE 0.3 +44.6 44605 1.6 CBFA2T2 SP7 TRIM24 EGR1 DPF2 IKZF1 ATF1 PKNOX1 ZNF629 PATZ1 ENSG00000250258 THBS4 ENSG00000249825 ENSG00000238254 LOC102724557
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724557 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724557 Gene

Genomic Locations for LOC102724557 Gene
chr5:79,801,384-79,846,392
(GRCh38/hg38)
Size:
45,009 bases
Orientation:
Plus strand

Genomic View for LOC102724557 Gene

Genes around LOC102724557 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724557 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724557 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724557 Gene

Proteins for LOC102724557 Gene

Post-translational modifications for LOC102724557 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724557 Gene

Domains & Families for LOC102724557 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724557 Gene

Function for LOC102724557 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724557 Gene

Localization for LOC102724557 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724557 Gene

Pathways & Interactions for LOC102724557 Gene

PathCards logo

SuperPathways for LOC102724557 Gene

No Data Available

Interacting Proteins for LOC102724557 Gene

Gene Ontology (GO) - Biological Process for LOC102724557 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724557 Gene

Drugs & Compounds for LOC102724557 Gene

No Compound Related Data Available

Transcripts for LOC102724557 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724557 Gene

No ASD Table

Relevant External Links for LOC102724557 Gene

GeneLoc Exon Structure for
LOC102724557

No data available for mRNA/cDNA for LOC102724557 Gene

Expression for LOC102724557 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724557 Gene

Orthologs for LOC102724557 Gene

No data available for Orthologs and Evolution for LOC102724557 Gene

Paralogs for LOC102724557 Gene

No data available for Paralogs for LOC102724557 Gene

Variants for LOC102724557 Gene

Sequence variations from dbSNP and Humsavar for LOC102724557 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000033583 -- 79,839,430(+) G/A upstream_transcript_variant
rs1000419630 -- 79,844,545(+) T/G intron_variant
rs1000624524 -- 79,844,766(+) A/G intron_variant
rs1000973876 -- 79,841,464(+) A/G non_coding_transcript_variant
rs1001040540 -- 79,840,796(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724557 Gene

Disorders for LOC102724557 Gene

No disorders were found for LOC102724557 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724557 Gene

Publications for LOC102724557 Gene

No publications were found for LOC102724557 Gene.

No data available for External Links for LOC102724557 Gene

Products for LOC102724557 Gene

Sources for LOC102724557 Gene

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