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Aliases for LOC102724555 Gene

Subcategory (RNA class) for LOC102724555 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724555 Gene

  • Uncharacterized LOC102724555 3

External Ids for LOC102724555 Gene

Previous GeneCards Identifiers for LOC102724555 Gene

  • GC07U903753
  • GC07M123584

Summaries for LOC102724555 Gene

GeneCards Summary for LOC102724555 Gene

LOC102724555 (Uncharacterized LOC102724555) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724555 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724555 Gene

Genomics for LOC102724555 Gene

GeneHancer (GH) Regulatory Elements for LOC102724555 Gene

Promoters and enhancers for LOC102724555 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J123622 Enhancer 1.3 Ensembl ENCODE dbSUPER 600.7 +1.8 1786 1.3 ZFX ZKSCAN8 CEBPG RERE BACH1 TRIM24 SP7 SP1 PRDM1 PKNOX1 LOC102724555 ENSG00000230442 ENSG00000272686 NDUFA5 ASB15
GH07J123624 Enhancer 1.2 Ensembl ENCODE dbSUPER 600.7 +0.2 157 0.4 CC2D1A CTCF YY1 TRIM24 CREM ZNF644 SMARCA4 CREB1 ATF1 ZNF143 ENSG00000230442 LOC102724555 WASL NDUFA5 ASB15
GH07J123625 Enhancer 0.4 dbSUPER 600.7 -0.9 -863 0.7 ATF7 CEBPG CEBPB LOC102724555 ENSG00000230442 HYAL4 LMOD2 ASB15
GH07J123608 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +14.3 14276 3.4 ZKSCAN8 BACH1 TRIM24 SMARCA4 CEBPA GATAD2A ATF1 GTF2E2 PKNOX1 ZNF24 ENSG00000272686 LMOD2 ASB15 NDUFA5 IQUB ENSG00000230442 LOC102724555
GH07J123627 Enhancer 0.7 Ensembl dbSUPER 0.7 -4.3 -4344 0.6 ATF1 CREM CEBPB NANOG HYAL4 ENSG00000230442 LOC102724555 LMOD2 ASB15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724555 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724555 Gene

Genomic Locations for LOC102724555 Gene
chr7:123,614,161-123,624,957
(GRCh38/hg38)
Size:
10,797 bases
Orientation:
Minus strand

Genomic View for LOC102724555 Gene

Genes around LOC102724555 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724555 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724555 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724555 Gene

Proteins for LOC102724555 Gene

Post-translational modifications for LOC102724555 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724555 Gene

Domains & Families for LOC102724555 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724555 Gene

Function for LOC102724555 Gene

Phenotypes From GWAS Catalog for LOC102724555 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724555 Gene

Localization for LOC102724555 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724555 Gene

Pathways & Interactions for LOC102724555 Gene

PathCards logo

SuperPathways for LOC102724555 Gene

No Data Available

Interacting Proteins for LOC102724555 Gene

Gene Ontology (GO) - Biological Process for LOC102724555 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724555 Gene

Drugs & Compounds for LOC102724555 Gene

No Compound Related Data Available

Transcripts for LOC102724555 Gene

mRNA/cDNA for LOC102724555 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724555 Gene

No ASD Table

Relevant External Links for LOC102724555 Gene

GeneLoc Exon Structure for
LOC102724555

Expression for LOC102724555 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724555 Gene

Orthologs for LOC102724555 Gene

No data available for Orthologs and Evolution for LOC102724555 Gene

Paralogs for LOC102724555 Gene

No data available for Paralogs for LOC102724555 Gene

Variants for LOC102724555 Gene

Sequence variations from dbSNP and Humsavar for LOC102724555 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000093336 -- 123,617,173(-) T/G intron_variant
rs1000176521 -- 123,625,655(-) A/G upstream_transcript_variant
rs1000209286 -- 123,618,696(-) T/C intron_variant
rs1000376802 -- 123,623,312(-) A/G intron_variant
rs1000892930 -- 123,618,691(-) A/G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724555 Gene

Variant ID Type Subtype PubMed ID
esv3891198 CNV gain 25118596
nsv831116 CNV gain+loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724555 Gene

Disorders for LOC102724555 Gene

No disorders were found for LOC102724555 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724555 Gene

Publications for LOC102724555 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for LOC102724555 Gene

Products for LOC102724555 Gene

Sources for LOC102724555 Gene

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