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Aliases for LOC102724553 Gene

Subcategory (RNA class) for LOC102724553 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724553 Gene

  • Uncharacterized LOC102724553 3

External Ids for LOC102724553 Gene

Previous GeneCards Identifiers for LOC102724553 Gene

  • GC15U901688

Summaries for LOC102724553 Gene

GeneCards Summary for LOC102724553 Gene

LOC102724553 (Uncharacterized LOC102724553) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724553 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724553 Gene

Genomics for LOC102724553 Gene

GeneHancer (GH) Regulatory Elements for LOC102724553 Gene

Promoters and enhancers for LOC102724553 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J048046 Enhancer 0.5 Ensembl ENCODE 600.7 -0.5 -541 2.1 TCF7L2 LOC102724553 GC15P048022 SLC24A5 ENSG00000259754
GH15J048062 Enhancer 0.8 Ensembl 0.4 -15.7 -15673 1.4 SP7 PRDM1 ZNF644 GLIS2 ZNF488 PRDM10 ZEB2 ZNF639 ZNF629 PATZ1 SLC24A5 LOC102724553
GH15J048040 Enhancer 0.6 Ensembl ENCODE 0.4 +6.2 6237 0.5 CEBPB JUND MAX SLC24A5 LOC102724553 GC15P048022 ENSG00000259754
GH15J048005 Enhancer 0.9 Ensembl ENCODE 0.3 +40.8 40811 2.4 PKNOX1 PRDM10 ZIC2 ZNF501 SMARCC2 BRCA1 CEBPB CHD2 JUN ZBTB20 GC15P048022 LOC102724553 ENSG00000259730 LOC105370805 ENSG00000259754
GH15J048084 Enhancer 0.8 Ensembl ENCODE 0.3 -39.4 -39397 2.4 CTCF MAFK RAD21 ZNF316 SCRT2 MAFG SMC3 RCOR1 ZNF654 MAFF SLC24A5 LOC102724553
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724553 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724553 Gene

Genomic Locations for LOC102724553 Gene
chr15:47,960,311-48,046,612
(GRCh38/hg38)
Size:
86,302 bases
Orientation:
Minus strand

Genomic View for LOC102724553 Gene

Genes around LOC102724553 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724553 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724553 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724553 Gene

Proteins for LOC102724553 Gene

Post-translational modifications for LOC102724553 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724553 Gene

Domains & Families for LOC102724553 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724553 Gene

Function for LOC102724553 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724553 Gene

Localization for LOC102724553 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724553 Gene

Pathways & Interactions for LOC102724553 Gene

PathCards logo

SuperPathways for LOC102724553 Gene

No Data Available

Interacting Proteins for LOC102724553 Gene

Gene Ontology (GO) - Biological Process for LOC102724553 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724553 Gene

Drugs & Compounds for LOC102724553 Gene

No Compound Related Data Available

Transcripts for LOC102724553 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724553 Gene

No ASD Table

Relevant External Links for LOC102724553 Gene

GeneLoc Exon Structure for
LOC102724553

No data available for mRNA/cDNA for LOC102724553 Gene

Expression for LOC102724553 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724553 Gene

Orthologs for LOC102724553 Gene

No data available for Orthologs and Evolution for LOC102724553 Gene

Paralogs for LOC102724553 Gene

No data available for Paralogs for LOC102724553 Gene

Variants for LOC102724553 Gene

Sequence variations from dbSNP and Humsavar for LOC102724553 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000027584 -- 47,987,695(-) TTTT/TT non_coding_transcript_variant
rs1000047693 -- 47,971,591(-) T/C intron_variant
rs1000094065 -- 47,992,796(-) T/C intron_variant
rs1000194194 -- 47,969,594(-) C/T intron_variant, non_coding_transcript_variant
rs1000292708 -- 47,965,267(-) T/C genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724553 Gene

Disorders for LOC102724553 Gene

No disorders were found for LOC102724553 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724553 Gene

Publications for LOC102724553 Gene

No publications were found for LOC102724553 Gene.

No data available for External Links for LOC102724553 Gene

Products for LOC102724553 Gene

Sources for LOC102724553 Gene

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