Aliases for LOC102724488 Gene

Aliases for LOC102724488 Gene

  • Synaptotagmin-15 3 5
  • Uncharacterized Protein 13
  • FO681492.1 5

External Ids for LOC102724488 Gene

Previous GeneCards Identifiers for LOC102724488 Gene

  • GC10U901945

Summaries for LOC102724488 Gene

GeneCards Summary for LOC102724488 Gene

LOC102724488 (Synaptotagmin-15) is a Protein Coding gene. An important paralog of this gene is SYT15.

Additional gene information for LOC102724488 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102724488 Gene

Genomics for LOC102724488 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102724488 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J047705 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 0.2 +59.0 59007 2 PRDM10 PATZ1 REST ZNF561 NONO MGA KLF9 EGR1 CTBP1 ZBTB10 LOC107984289 RHEBP2 lnc-NPY4R2-569 SHLD2P3 LOC102724488 AGAP9 ANXA8
GH10J047762 Promoter 0.3 Ensembl 0.7 +2.3 2308 1.4 LOC102724488 piR-48119-002 ANXA8 AGAP9
GH10J047681 Enhancer 0.4 Ensembl 0.2 +83.7 83713 1.4 ZNF316 FOXA2 EMSY MAFK HSALNG0077728 SHLD2P3 LOC102724488 AGAP9 ANXA8
GH10J047758 Enhancer 0.2 Ensembl 0.4 +6.1 6107 0.6 piR-48119-002 LOC102724488 LOC102724593 ANXA8 AGAP9
GH10J047775 Enhancer 0.2 Ensembl 0.4 -10.8 -10772 0.8 piR-41547-002 LOC102724488 piR-61475-002 NPY4R2 ANXA8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724488 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102724488 Gene

Genomic Locations for LOC102724488 Gene
chr10:47,744,717-47,765,208
(GRCh38/hg38)
Size:
20,492 bases
Orientation:
Minus strand

Genomic View for LOC102724488 Gene

Genes around LOC102724488 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724488 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724488 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724488 Gene

Proteins for LOC102724488 Gene

  • Protein details for LOC102724488 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A096LNH4-A0A096LNH4_HUMAN
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A096LNH4

    Protein attributes for LOC102724488 Gene

    Size:
    444 amino acids
    Molecular mass:
    49698 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC102724488 Gene

Post-translational modifications for LOC102724488 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724488 Gene

Domains & Families for LOC102724488 Gene

Gene Families for LOC102724488 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for LOC102724488 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with LOC102724488: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102724488 Gene

Function for LOC102724488 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724488 Gene

Localization for LOC102724488 Gene

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for LOC102724488 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with LOC102724488: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for LOC102724488 Gene

Pathways & Interactions for LOC102724488 Gene

PathCards logo

SuperPathways for LOC102724488 Gene

No Data Available

Interacting Proteins for LOC102724488 Gene

Gene Ontology (GO) - Biological Process for LOC102724488 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724488 Gene

Drugs & Compounds for LOC102724488 Gene

No Compound Related Data Available

Transcripts for LOC102724488 Gene

mRNA/cDNA for LOC102724488 Gene

5 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724488 Gene

No ASD Table

Relevant External Links for LOC102724488 Gene

GeneLoc Exon Structure for
LOC102724488

Expression for LOC102724488 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724488 Gene

Orthologs for LOC102724488 Gene

Evolution for LOC102724488 Gene

ENSEMBL:
Gene Tree for LOC102724488 (if available)
TreeFam:
Gene Tree for LOC102724488 (if available)

No data available for Orthologs for LOC102724488 Gene

Paralogs for LOC102724488 Gene

genes like me logo Genes that share paralogs with LOC102724488: view

Variants for LOC102724488 Gene

Additional dbSNP identifiers (rs#s) for LOC102724488 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724488 Gene

Disorders for LOC102724488 Gene

Additional Disease Information for LOC102724488

No disorders were found for LOC102724488 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC102724488 Gene

Publications for LOC102724488 Gene

  1. A reference map of the human binary protein interactome. (PMID: 32296183) Luck K … Calderwood MA (Nature 2020) 3
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 13

No data available for Mastermind for LOC102724488 Gene

Products for LOC102724488 Gene

Sources for LOC102724488 Gene