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LOC102724467 Gene(RNA Gene)

Uncharacterized LOC102724467

GCID:
GC16M087774
GIFtS:
8
Genes Participants
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Aliases for LOC102724467 Gene

Subcategory (RNA class) for LOC102724467 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724467 Gene

  • Uncharacterized LOC102724467 3

External Ids for LOC102724467 Gene

Summaries for LOC102724467 Gene

GeneCards Summary for LOC102724467 Gene

LOC102724467 (Uncharacterized LOC102724467) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724467 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724467 Gene

Genomics for LOC102724467 Gene

GeneHancer (GH) Regulatory Elements for LOC102724467 Gene

Promoters and enhancers for LOC102724467 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J087777 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 -0.5 -539 4.2 ZNF652 ZFX SP1 CC2D1A CTCF ELF3 ZKSCAN8 MNT ZNF148 MLLT1 KLHDC4 LOC102724467 ENSG00000260498 ZC3H18 LOC101928659 BANP ENSG00000260121 LOC100129215 CTU2 ZCCHC14
GH16J087761 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 +14.7 14744 5.6 SP1 ZFX ELF3 MNT SIX5 ZNF148 NKRF POLR2A ZNF121 CEBPG KLHDC4 LOC105371399 ENSG00000260671 LOC100129215 LOC102724467
GH16J087774 Enhancer 1.1 Ensembl ENCODE 0.7 +3.9 3873 1.9 SP1 CC2D1A GTF2F1 BACH1 TRIM24 RELA CREM MLLT1 ZNF639 SMARCA4 ENSG00000260671 ZC3H18 LOC100129215 LOC102724467 ENSG00000260498 LOC105371399
GH16J087769 Enhancer 0.9 Ensembl ENCODE 0.4 +10.2 10248 1.4 CTCF ZNF384 RAD21 KAT8 PKNOX1 GATAD2A REST TRIM22 HDAC1 ZBTB25 ENSG00000260671 LOC105371399 LOC102724467
GH16J087776 Enhancer 0.5 FANTOM5 dbSUPER 0.7 +2.2 2211 0.1 ENSG00000260498 LOC102724467 LOC105371399
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724467 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724467 Gene

Genomic Locations for LOC102724467 Gene
chr16:87,766,331-87,779,148
(GRCh38/hg38)
Size:
12,818 bases
Orientation:
Minus strand

Genomic View for LOC102724467 Gene

Genes around LOC102724467 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724467 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724467 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC102724467 Gene

Proteins for LOC102724467 Gene

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Post-translational modifications for LOC102724467 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724467 Gene

Domains & Families for LOC102724467 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724467 Gene

Function for LOC102724467 Gene

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  3. miRNA
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  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724467 Gene

Localization for LOC102724467 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724467 Gene

Pathways & Interactions for LOC102724467 Gene

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SuperPathways for LOC102724467 Gene

No Data Available

Interacting Proteins for LOC102724467 Gene

Gene Ontology (GO) - Biological Process for LOC102724467 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724467 Gene

Drugs & Compounds for LOC102724467 Gene

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  1. Drug
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No Compound Related Data Available

Transcripts for LOC102724467 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC102724467 Gene

(3) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724467 Gene

No ASD Table

Relevant External Links for LOC102724467 Gene

GeneLoc Exon Structure for
LOC102724467

Expression for LOC102724467 Gene

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  1. Primer
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No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724467 Gene

Orthologs for LOC102724467 Gene

No data available for Orthologs and Evolution for LOC102724467 Gene

Paralogs for LOC102724467 Gene

No data available for Paralogs for LOC102724467 Gene

Variants for LOC102724467 Gene

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  1. SNP Genotyping and Copy Number Assay
VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LOC102724467 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000251673 -- 87,771,879(-) T/C intron_variant
rs1000333764 -- 87,777,155(-) C/T intron_variant
rs1000430273 -- 87,776,860(-) G/A/C intron_variant
rs1000461388 -- 87,775,277(-) T/C intron_variant
rs1000620259 -- 87,778,485(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724467 Gene

Variant ID Type Subtype PubMed ID
dgv3062n100 CNV loss 25217958
esv2761934 CNV loss 21179565
esv3639528 CNV loss 21293372
nsv1061977 CNV loss 25217958
nsv1062946 CNV gain 25217958
nsv1160441 CNV deletion 26073780
nsv457616 CNV gain 19166990
nsv573536 CNV gain 21841781
nsv573538 CNV loss 21841781
nsv833322 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724467 Gene

Disorders for LOC102724467 Gene

No disorders were found for LOC102724467 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724467 Gene

Publications for LOC102724467 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for LOC102724467 Gene

Products for LOC102724467 Gene

Sources for LOC102724467 Gene

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