Aliases for LOC102724452 Gene

Subcategory (RNA class) for LOC102724452 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC102724452 Gene

  • Uncharacterized LOC102724452 3
  • Novel Transcript, Antisense To AGBL1 5
  • Lnc-NTRK3-3 165
  • AC016987.1 5

External Ids for LOC102724452 Gene

Previous GeneCards Identifiers for LOC102724452 Gene

  • GC15U901745

Summaries for LOC102724452 Gene

GeneCards Summary for LOC102724452 Gene

LOC102724452 (Uncharacterized LOC102724452) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102724452 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102724452 Gene

Genomics for LOC102724452 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102724452 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J086988 Enhancer 0.3 Ensembl 600.7 -0.2 -175 0.4 NANOG LOC102724452 piR-40476-030 AGBL1
GH15J086986 Enhancer 0.2 Ensembl 600.7 +1.3 1325 1 LOC102724452 piR-38352-210 AGBL1
GH15J086972 Enhancer 0.4 Ensembl 0.4 +15.1 15125 1 POLR2A RAD21 PKNOX1 piR-38352-210 LOC102724452 AGBL1
GH15J086940 Enhancer 0.2 Ensembl 0.3 +47.7 47725 0.6 LOC105370954 piR-38352-210 LOC102724452 AGBL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724452 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102724452 Gene

Genomic Locations for LOC102724452 Gene
chr15:86,938,797-86,988,426
(GRCh38/hg38)
Size:
49,630 bases
Orientation:
Minus strand

Genomic View for LOC102724452 Gene

Genes around LOC102724452 on UCSC Golden Path with GeneCards custom track
LOC102724452 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC102724452 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724452 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724452 Gene

Proteins for LOC102724452 Gene

Post-translational modifications for LOC102724452 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724452 Gene

Domains & Families for LOC102724452 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102724452 Gene

Function for LOC102724452 Gene

Phenotypes From GWAS Catalog for LOC102724452 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724452 Gene

Localization for LOC102724452 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724452 Gene

Pathways & Interactions for LOC102724452 Gene

PathCards logo

SuperPathways for LOC102724452 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102724452 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102724452 Gene

Drugs & Compounds for LOC102724452 Gene

No Compound Related Data Available

Transcripts for LOC102724452 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102724452 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002889A9_9606 lncRNA 499 2

Ensembl: ENST00000558587 (view in UCSC) ,

LNCipedia: lnc-NTRK3-3:1,

URS0000A77260_9606 lncRNA 499 1

RefSeq: NR_135683,

LOC102724452 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102724452 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724452 Gene

No ASD Table

Relevant External Links for LOC102724452 Gene

GeneLoc Exon Structure for
LOC102724452

Expression for LOC102724452 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC102724452 Gene

genes like me logo Genes that share expression patterns with LOC102724452: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724452 Gene

Orthologs for LOC102724452 Gene

Evolution for LOC102724452 Gene

ENSEMBL:
Gene Tree for LOC102724452 (if available)
TreeFam:
Gene Tree for LOC102724452 (if available)

No data available for Orthologs for LOC102724452 Gene

Paralogs for LOC102724452 Gene

No data available for Paralogs for LOC102724452 Gene

Variants for LOC102724452 Gene

Additional dbSNP identifiers (rs#s) for LOC102724452 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724452 Gene

Disorders for LOC102724452 Gene

No disorders were found for LOC102724452 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724452 Gene

Publications for LOC102724452 Gene

No publications were found for LOC102724452 Gene.

No data available for Mastermind for LOC102724452 Gene

Products for LOC102724452 Gene

Sources for LOC102724452 Gene