Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC102724450 Gene

Subcategory (RNA class) for LOC102724450 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724450 Gene

  • Uncharacterized LOC102724450 3
  • Novel Transcript 5
  • AL031847.1 5

External Ids for LOC102724450 Gene

Summaries for LOC102724450 Gene

GeneCards Summary for LOC102724450 Gene

LOC102724450 (Uncharacterized LOC102724450) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724450 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724450 Gene

Genomics for LOC102724450 Gene

GeneHancer (GH) Regulatory Elements for LOC102724450 Gene

Promoters and enhancers for LOC102724450 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J006204 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 600.7 -0.2 -151 3.3 ZNF473 HDGF ZFX CTCF ELF3 ZNF148 NKRF POLR2A MLLT1 ZNF121 RNF207 LOC102724450 THAP3 PHF13 ZBTB48 RPL22 NOL9
GH01J006260 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.5 -56.1 -56078 4.9 CEBPG AHR ZBTB7A YY1 SP7 SP1 SP5 CREM ZNF639 EGR1 GPR153 GC01P006262 ICMT LINC00337 RPL22 RNF207 LOC102724450 CHD5 NOL9 THAP3
GH01J006445 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 10.6 -243.5 -243503 5.6 ELF3 MNT POLR2A AHR SP1 PPARG SP5 ZNF644 KAT8 GLIS2 ESPN PLEKHG5 RNF207 LOC102724450 RPL22 ACOT7 ENSG00000231868 TNFRSF25
GH01J006418 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 10.7 -213.6 -213621 2 SP1 GLIS2 ZIC2 ATF1 ZNF24 PATZ1 ZFX NRF1 SP2 EZH2 HES2 RPL22 RNF207 LOC102724450 ESPN ACOT7 GC01M006398
GH01J006424 Promoter 1.5 EPDnew Ensembl 10.7 -219.1 -219121 0.6 SP7 POLR2A EGR1 ZBTB8A LARP7 ZFX KLF9 EZH2 DPF2 CTBP1 ESPN HES2 RPL22 RNF207 LOC102724450 ACOT7 MIR4252
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724450 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724450 Gene

Genomic Locations for LOC102724450 Gene
chr1:6,204,840-6,205,780
(GRCh38/hg38)
Size:
941 bases
Orientation:
Minus strand
chr1:6,264,900-6,265,840
(GRCh37/hg19)
Size:
941 bases
Orientation:
Minus strand

Genomic View for LOC102724450 Gene

Genes around LOC102724450 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724450 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724450 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724450 Gene

Proteins for LOC102724450 Gene

Post-translational modifications for LOC102724450 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724450 Gene

Domains & Families for LOC102724450 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724450 Gene

Function for LOC102724450 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724450 Gene

Localization for LOC102724450 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724450 Gene

Pathways & Interactions for LOC102724450 Gene

PathCards logo

SuperPathways for LOC102724450 Gene

No Data Available

Interacting Proteins for LOC102724450 Gene

Gene Ontology (GO) - Biological Process for LOC102724450 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724450 Gene

Drugs & Compounds for LOC102724450 Gene

No Compound Related Data Available

Transcripts for LOC102724450 Gene

mRNA/cDNA for LOC102724450 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724450 Gene

No ASD Table

Relevant External Links for LOC102724450 Gene

GeneLoc Exon Structure for
LOC102724450

Expression for LOC102724450 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724450 Gene

Orthologs for LOC102724450 Gene

Evolution for LOC102724450 Gene

ENSEMBL:
Gene Tree for LOC102724450 (if available)
TreeFam:
Gene Tree for LOC102724450 (if available)

No data available for Orthologs for LOC102724450 Gene

Paralogs for LOC102724450 Gene

No data available for Paralogs for LOC102724450 Gene

Variants for LOC102724450 Gene

Sequence variations from dbSNP and Humsavar for LOC102724450 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000100757 -- 6,206,244(-) G/T upstream_transcript_variant
rs1000499898 -- 6,207,509(-) C/G upstream_transcript_variant
rs1000556011 -- 6,206,459(-) G/A upstream_transcript_variant
rs1001525195 -- 6,204,569(-) T/G downstream_transcript_variant
rs1002298098 -- 6,204,772(-) T/G downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724450 Gene

Disorders for LOC102724450 Gene

No disorders were found for LOC102724450 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724450 Gene

Publications for LOC102724450 Gene

No publications were found for LOC102724450 Gene.

No data available for External Links for LOC102724450 Gene

Products for LOC102724450 Gene

Sources for LOC102724450 Gene

Content
Loading form....