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Aliases for LOC102724421 Gene

Subcategory (RNA class) for LOC102724421 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724421 Gene

  • Uncharacterized LOC102724421 3
  • AC073530.1 5

External Ids for LOC102724421 Gene

Summaries for LOC102724421 Gene

GeneCards Summary for LOC102724421 Gene

LOC102724421 (Uncharacterized LOC102724421) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724421 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724421 Gene

Genomics for LOC102724421 Gene

GeneHancer (GH) Regulatory Elements for LOC102724421 Gene

Promoters and enhancers for LOC102724421 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J067096 Enhancer 0.8 ENCODE 650.7 -0.6 -648 1.2 FEZF1 ZNF335 ZNF366 FOS CEBPB ZNF398 ZEB2 TSHZ1 ZNF843 ZFP69B LOC102724421 GRIP1 RAB11AP2
GH12J067067 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 0.3 +27.3 27259 2.8 PKNOX1 MZF1 SIN3A ZNF2 ZNF335 GLIS2 ZNF366 ZSCAN5C ZNF654 SP3 GRIP1 CAND1 GGTA2P ENSG00000279310 LOC102724421
GH12J067090 Enhancer 0.5 ENCODE 0.7 +5.0 4995 0.9 SCRT1 SCRT2 PRDM10 ZBTB17 GRIP1 LOC102724421
GH12J067042 Enhancer 0.8 ENCODE 0.2 +53.6 53610 0.2 PKNOX1 INSM2 KLF17 FEZF1 ZNF2 ZEB1 ZNF366 ZSCAN5C FOS TSHZ1 ENSG00000279310 GRIP1 LOC102724421 GC12M066970
GH12J067039 Enhancer 0.7 ENCODE 0.2 +56.2 56173 1.7 INSM2 FEZF1 HIC1 ZNF664 ZNF213 ZNF366 PATZ1 ZSCAN5C KLF13 ZNF189 CAND1 GRIP1 ENSG00000279310 LOC102724421 GC12M066970
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC102724421 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724421 Gene

Genomic Locations for LOC102724421 Gene
chr12:67,035,508-67,096,406
(GRCh38/hg38)
Size:
60,899 bases
Orientation:
Minus strand
chr12:67,429,288-67,490,186
(GRCh37/hg19)
Size:
60,899 bases
Orientation:
Minus strand

Genomic View for LOC102724421 Gene

Genes around LOC102724421 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724421 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724421 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724421 Gene

Proteins for LOC102724421 Gene

Post-translational modifications for LOC102724421 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724421 Gene

Domains & Families for LOC102724421 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724421 Gene

Function for LOC102724421 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724421 Gene

Localization for LOC102724421 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724421 Gene

Pathways & Interactions for LOC102724421 Gene

SuperPathways for LOC102724421 Gene

No Data Available

Interacting Proteins for LOC102724421 Gene

Gene Ontology (GO) - Biological Process for LOC102724421 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724421 Gene

Drugs & Compounds for LOC102724421 Gene

No Compound Related Data Available

Transcripts for LOC102724421 Gene

mRNA/cDNA for LOC102724421 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724421 Gene

No ASD Table

Relevant External Links for LOC102724421 Gene

GeneLoc Exon Structure for
LOC102724421

Expression for LOC102724421 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102724421 Gene

genes like me logo Genes that share expression patterns with LOC102724421: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724421 Gene

Orthologs for LOC102724421 Gene

Evolution for LOC102724421 Gene

ENSEMBL:
Gene Tree for LOC102724421 (if available)
TreeFam:
Gene Tree for LOC102724421 (if available)

No data available for Orthologs for LOC102724421 Gene

Paralogs for LOC102724421 Gene

No data available for Paralogs for LOC102724421 Gene

Variants for LOC102724421 Gene

Sequence variations from dbSNP and Humsavar for LOC102724421 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000128865 -- 67,079,463(-) A/T intron_variant
rs1000157320 -- 67,096,022(-) G/A intron_variant
rs1000175903 -- 67,096,278(-) G/T non_coding_transcript_variant
rs1000192418 -- 67,086,156(-) A/G intron_variant
rs1000684230 -- 67,079,877(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724421 Gene

Variant ID Type Subtype PubMed ID
nsv559212 CNV gain 21841781
nsv559211 CNV loss 21841781
esv3892214 CNV gain 25118596
esv3892209 CNV gain 25118596

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724421 Gene

Disorders for LOC102724421 Gene

Additional Disease Information for LOC102724421

No disorders were found for LOC102724421 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC102724421 Gene

Publications for LOC102724421 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LOC102724421 Gene

Sources for LOC102724421 Gene

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