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Aliases for LOC102724421 Gene

Subcategory (RNA class) for LOC102724421 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724421 Gene

  • Uncharacterized LOC102724421 3

External Ids for LOC102724421 Gene

Previous GeneCards Identifiers for LOC102724421 Gene

  • GC12M067035

Summaries for LOC102724421 Gene

GeneCards Summary for LOC102724421 Gene

LOC102724421 (Uncharacterized LOC102724421) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724421 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724421 Gene

Genomics for LOC102724421 Gene

GeneHancer (GH) Regulatory Elements for LOC102724421 Gene

Promoters and enhancers for LOC102724421 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J067096 Enhancer 1 Ensembl ENCODE 600.7 -0.8 -819 1.4 MAFK SP7 PRDM1 ZBTB8A ZNF600 ZEB2 ZNF639 ZNF629 ZNF692 CEBPB ENSG00000257083 LOC102724421 GRIP1 RAB11AP2
GH12J067090 Enhancer 0.7 Ensembl ENCODE 0.7 +4.2 4183 2.6 PRDM10 SCRT2 ZNF580 ZBTB17 SCRT1 ZNF146 GRIP1 LOC102724421 ENSG00000257083
GH12J067083 Enhancer 0.6 Ensembl 0.4 +11.5 11484 2.8 CTBP1 RFX1 ZNF217 DPF2 GATA3 FOXA1 TCF7L2 REST HLF GRIP1 ENSG00000257083 LOC102724421
GH12J067079 Enhancer 0.5 Ensembl 0.4 +16.2 16183 1.8 ZNF629 TCF7L2 OSR2 GLIS1 PRDM6 GRIP1 ENSG00000257083 LOC102724421
GH12J067077 Enhancer 0.4 Ensembl ENCODE 0.4 +18.4 18360 1.1 GRIP1 LOC102724421 ENSG00000257083
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724421 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724421 Gene

Genomic Locations for LOC102724421 Gene
chr12:67,077,626-67,096,284
(GRCh38/hg38)
Size:
18,659 bases
Orientation:
Minus strand

Genomic View for LOC102724421 Gene

Genes around LOC102724421 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724421 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724421 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724421 Gene

Proteins for LOC102724421 Gene

Post-translational modifications for LOC102724421 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724421 Gene

Domains & Families for LOC102724421 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724421 Gene

Function for LOC102724421 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724421 Gene

Localization for LOC102724421 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724421 Gene

Pathways & Interactions for LOC102724421 Gene

PathCards logo

SuperPathways for LOC102724421 Gene

No Data Available

Interacting Proteins for LOC102724421 Gene

Gene Ontology (GO) - Biological Process for LOC102724421 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724421 Gene

Drugs & Compounds for LOC102724421 Gene

No Compound Related Data Available

Transcripts for LOC102724421 Gene

mRNA/cDNA for LOC102724421 Gene

(3) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724421 Gene

No ASD Table

Relevant External Links for LOC102724421 Gene

GeneLoc Exon Structure for
LOC102724421

Expression for LOC102724421 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724421 Gene

Orthologs for LOC102724421 Gene

No data available for Orthologs and Evolution for LOC102724421 Gene

Paralogs for LOC102724421 Gene

No data available for Paralogs for LOC102724421 Gene

Variants for LOC102724421 Gene

Sequence variations from dbSNP and Humsavar for LOC102724421 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000128865 -- 67,079,463(-) A/T intron_variant
rs1000157320 -- 67,096,022(-) G/A intron_variant
rs1000175903 -- 67,096,278(-) G/T non_coding_transcript_variant
rs1000192418 -- 67,086,156(-) A/C/G intron_variant
rs1000684230 -- 67,079,877(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724421 Gene

Variant ID Type Subtype PubMed ID
esv3892209 CNV gain 25118596
esv3892214 CNV gain 25118596
nsv559211 CNV loss 21841781
nsv559212 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724421 Gene

Disorders for LOC102724421 Gene

No disorders were found for LOC102724421 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724421 Gene

Publications for LOC102724421 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for LOC102724421 Gene

Products for LOC102724421 Gene

Sources for LOC102724421 Gene

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