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Aliases for LOC102724416 Gene

Subcategory (RNA class) for LOC102724416 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724416 Gene

  • Uncharacterized LOC102724416 3

External Ids for LOC102724416 Gene

Previous GeneCards Identifiers for LOC102724416 Gene

  • GC01U904107

Summaries for LOC102724416 Gene

GeneCards Summary for LOC102724416 Gene

LOC102724416 (Uncharacterized LOC102724416) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724416 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724416 Gene

Genomics for LOC102724416 Gene

GeneHancer (GH) Regulatory Elements for LOC102724416 Gene

Promoters and enhancers for LOC102724416 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J065308 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 -0.3 -344 2 ELF3 ZKSCAN8 ZNF148 ZNF384 ZSCAN21 AHR TFE3 NCOA6 SP7 PPARG DNAJC6 LOC102724416 LINC01359 PDE4B GC01M065311
GH01J065292 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +16.2 16151 1.9 ZFX CC2D1A ZKSCAN8 CBFA2T2 ZNF148 MLLT1 GTF2F1 TRIM24 EGR1 ZNF639 COX6CP13 ENSG00000229294 LOC102724416 GC01M065252 DNAJC6
GH01J065297 Enhancer 0.8 ENCODE dbSUPER 0.4 +11.6 11594 0.1 CTBP1 ESRRA ZNF217 DPF2 CUX1 GATAD2B GATA3 SMARCE1 COX6CP13 ENSG00000229294 LOC102724416 GC01M065252 DNAJC6
GH01J065278 Enhancer 0.9 ENCODE dbSUPER 0.3 +30.4 30377 0.7 CBFA2T2 ZNF148 SMARCA4 IKZF1 ZIC2 HDAC1 ZNF316 EP300 TCF12 HDAC2 DNAJC6 RNU2-15P LEPROT LEPR AK4 COX6CP13 GC01M065252 LOC102724416
GH01J065277 Enhancer 0.9 ENCODE dbSUPER 0.3 +31.1 31090 0.6 CC2D1A ZNF639 GMEB1 ETV6 SOX6 CTBP1 HDAC2 E2F5 GATAD2A MNT DNAJC6 GC01M065252 COX6CP13 LOC102724416
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724416 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724416 Gene

Genomic Locations for LOC102724416 Gene
chr1:65,277,547-65,309,457
(GRCh38/hg38)
Size:
31,911 bases
Orientation:
Minus strand

Genomic View for LOC102724416 Gene

Genes around LOC102724416 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724416 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724416 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724416 Gene

Proteins for LOC102724416 Gene

Post-translational modifications for LOC102724416 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724416 Gene

Domains & Families for LOC102724416 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724416 Gene

Function for LOC102724416 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724416 Gene

Localization for LOC102724416 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724416 Gene

Pathways & Interactions for LOC102724416 Gene

PathCards logo

SuperPathways for LOC102724416 Gene

No Data Available

Interacting Proteins for LOC102724416 Gene

Gene Ontology (GO) - Biological Process for LOC102724416 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724416 Gene

Drugs & Compounds for LOC102724416 Gene

No Compound Related Data Available

Transcripts for LOC102724416 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724416 Gene

No ASD Table

Relevant External Links for LOC102724416 Gene

GeneLoc Exon Structure for
LOC102724416

No data available for mRNA/cDNA for LOC102724416 Gene

Expression for LOC102724416 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724416 Gene

Orthologs for LOC102724416 Gene

No data available for Orthologs and Evolution for LOC102724416 Gene

Paralogs for LOC102724416 Gene

No data available for Paralogs for LOC102724416 Gene

Variants for LOC102724416 Gene

Sequence variations from dbSNP and Humsavar for LOC102724416 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000010813 -- 65,306,519(-) G/A non_coding_transcript_variant
rs1000210178 -- 65,298,988(-) C/T downstream_transcript_variant, genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000271200 -- 65,306,664(-) A/C intron_variant
rs1000286953 -- 65,292,794(-) T/C genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000338947 -- 65,292,518(-) C/A genic_downstream_transcript_variant, non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724416 Gene

Disorders for LOC102724416 Gene

No disorders were found for LOC102724416 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724416 Gene

Publications for LOC102724416 Gene

No publications were found for LOC102724416 Gene.

No data available for External Links for LOC102724416 Gene

Products for LOC102724416 Gene

Sources for LOC102724416 Gene

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