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Aliases for LOC102724406 Gene

Subcategory (RNA class) for LOC102724406 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724406 Gene

  • Uncharacterized LOC102724406 3

External Ids for LOC102724406 Gene

Previous GeneCards Identifiers for LOC102724406 Gene

  • GC06U902592

Summaries for LOC102724406 Gene

GeneCards Summary for LOC102724406 Gene

LOC102724406 (Uncharacterized LOC102724406) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC102724406 include Schaaf-Yang Syndrome.

Additional gene information for LOC102724406 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724406 Gene

Genomics for LOC102724406 Gene

GeneHancer (GH) Regulatory Elements for LOC102724406 Gene

Promoters and enhancers for LOC102724406 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J100415 Enhancer 0.5 Ensembl 0.3 +22.0 22014 0.2 CBFA2T2 ZNF341 STAT1 ZNF335 CBFA2T3 GC06P100411 ENSG00000228082 LOC102724406 SIM1
GH06J100396 Enhancer 0.2 Ensembl 0.7 +2.7 2714 0.8 ENSG00000228082 LOC102724406 GC06P100411 SIM1
GH06J100420 Enhancer 0.4 Ensembl ENCODE 0.3 +26.9 26914 1.6 GC06P100411 ENSG00000228082 LOC102724406 SIM1
GH06J100425 Enhancer 0.4 Ensembl 0.3 +32.8 32814 2.2 CEBPB CEBPG ENSG00000228082 GC06P100411 LOC102724406 SIM1
GH06J100431 Enhancer 0.4 Ensembl 0.3 +39.1 39114 4 NFE2 MAFG CEBPG SIM1 ENSG00000228082 GC06P100411 LOC102724406
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724406 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724406 Gene

Genomic Locations for LOC102724406 Gene
chr6:100,393,887-100,445,425
(GRCh38/hg38)
Size:
51,539 bases
Orientation:
Plus strand

Genomic View for LOC102724406 Gene

Genes around LOC102724406 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724406 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724406 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724406 Gene

Proteins for LOC102724406 Gene

Post-translational modifications for LOC102724406 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724406 Gene

Domains & Families for LOC102724406 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724406 Gene

Function for LOC102724406 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724406 Gene

Localization for LOC102724406 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724406 Gene

Pathways & Interactions for LOC102724406 Gene

PathCards logo

SuperPathways for LOC102724406 Gene

No Data Available

Interacting Proteins for LOC102724406 Gene

Gene Ontology (GO) - Biological Process for LOC102724406 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724406 Gene

Drugs & Compounds for LOC102724406 Gene

No Compound Related Data Available

Transcripts for LOC102724406 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724406 Gene

No ASD Table

Relevant External Links for LOC102724406 Gene

GeneLoc Exon Structure for
LOC102724406

No data available for mRNA/cDNA for LOC102724406 Gene

Expression for LOC102724406 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724406 Gene

Orthologs for LOC102724406 Gene

No data available for Orthologs and Evolution for LOC102724406 Gene

Paralogs for LOC102724406 Gene

No data available for Paralogs for LOC102724406 Gene

Variants for LOC102724406 Gene

Sequence variations from dbSNP and Humsavar for LOC102724406 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs138590764 uncertain-significance, Schaaf-yang syndrome 100,393,488(+) A/G upstream_transcript_variant
rs200106103 uncertain-significance, Schaaf-yang syndrome 100,393,821(+) G/A/T upstream_transcript_variant
rs3734354 benign, Schaaf-yang syndrome 100,420,903(+) G/A/T intron_variant
rs3734355 benign, Schaaf-yang syndrome 100,420,845(+) G/A/T intron_variant
rs886060896 uncertain-significance, Schaaf-yang syndrome 100,420,832(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724406 Gene

Disorders for LOC102724406 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC102724406 Gene - From: GeneCards

Disorder Aliases PubMed IDs
schaaf-yang syndrome
  • shfyng
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC102724406: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724406 Gene

Publications for LOC102724406 Gene

No publications were found for LOC102724406 Gene.

No data available for External Links for LOC102724406 Gene

Products for LOC102724406 Gene

Sources for LOC102724406 Gene

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