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Aliases for LOC102724404 Gene

Subcategory (RNA class) for LOC102724404 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC102724404 Gene

  • Uncharacterized LOC102724404 3
  • CTB-109A12.1 3
  • AC008676.2 5

External Ids for LOC102724404 Gene

Previous GeneCards Identifiers for LOC102724404 Gene

  • GC05U902027

Summaries for LOC102724404 Gene

GeneCards Summary for LOC102724404 Gene

LOC102724404 (Uncharacterized LOC102724404) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724404 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724404 Gene

Genomics for LOC102724404 Gene

GeneHancer (GH) Regulatory Elements for LOC102724404 Gene

Promoters and enhancers for LOC102724404 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I157459 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 559.6 -0.4 -434 1.9 KLF17 SIN3A ZNF335 GLIS2 ZNF366 ZNF143 SP3 ZNF398 GLIS1 ZBTB26 NIPAL4 LOC102724404 FNDC9 ENSG00000248544 MED7 ITK ADAM19 ENSG00000253519
GH05I157382 Enhancer 1.1 Ensembl ENCODE dbSUPER 54.8 +74.4 74385 6.4 PKNOX1 JUN SIN3A ZMYM3 ZNF384 BMI1 GATA3 POLR2A RCOR1 FOSL2 ENSG00000248544 LOC102724404 NIPAL4 ADAM19 GC05P157388 GC05M157276 CYFIP2
GH05I157389 Enhancer 1 ENCODE dbSUPER 55.1 +69.7 69685 2.1 ELF3 MEIS2 SOX13 FOXA2 ZNF792 SAP130 JUN ARID4B SIN3A FOSL1 LOC102724404 NIPAL4 GC05P157388 RPL26P18 GC05M157276 CYFIP2
GH05I157265 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.1 +189.8 189843 9.9 HDGF ATF1 PKNOX1 SIN3A FEZF1 IRF4 YY1 ETS1 ZNF766 GLIS2 CYFIP2 LOC102724404 HAVCR2 THG1L ITK MED7 NIPAL4 ADAM19 ENSG00000248544 ENSG00000253653
GH05I157462 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 20.1 -4.2 -4219 2.7 PKNOX1 IRF4 E2F8 FOS ATF7 KLF13 JUNB TSHZ1 ZNF518A ATF4 NIPAL4 FNDC9 LOC102724404 THG1L ADAM19 HAVCR2 ENSG00000253519
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC102724404 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724404 Gene

Genomic Locations for LOC102724404 Gene
chr5:157,361,616-157,460,078
(GRCh38/hg38)
Size:
98,463 bases
Orientation:
Minus strand

Genomic View for LOC102724404 Gene

Genes around LOC102724404 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724404 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724404 Gene

Proteins for LOC102724404 Gene

Post-translational modifications for LOC102724404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724404 Gene

Domains & Families for LOC102724404 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724404 Gene

Function for LOC102724404 Gene

Phenotypes From GWAS Catalog for LOC102724404 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724404 Gene

Localization for LOC102724404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724404 Gene

Pathways & Interactions for LOC102724404 Gene

SuperPathways for LOC102724404 Gene

No Data Available

Interacting Proteins for LOC102724404 Gene

Gene Ontology (GO) - Biological Process for LOC102724404 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724404 Gene

Drugs & Compounds for LOC102724404 Gene

No Compound Related Data Available

Transcripts for LOC102724404 Gene

mRNA/cDNA for LOC102724404 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724404 Gene

No ASD Table

Relevant External Links for LOC102724404 Gene

GeneLoc Exon Structure for
LOC102724404

Expression for LOC102724404 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102724404 Gene

genes like me logo Genes that share expression patterns with LOC102724404: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724404 Gene

Orthologs for LOC102724404 Gene

Evolution for LOC102724404 Gene

ENSEMBL:
Gene Tree for LOC102724404 (if available)
TreeFam:
Gene Tree for LOC102724404 (if available)

No data available for Orthologs for LOC102724404 Gene

Paralogs for LOC102724404 Gene

No data available for Paralogs for LOC102724404 Gene

Variants for LOC102724404 Gene

Sequence variations from dbSNP and Humsavar for LOC102724404 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1105282 benign, not specified, Congenital ichthyosiform erythroderma 157,460,125(-) A/G upstream_transcript_variant
rs374248640 likely-benign, Congenital ichthyosiform erythroderma 157,460,212(-) C/A upstream_transcript_variant
rs555788817 uncertain-significance, Congenital ichthyosiform erythroderma 157,460,094(-) C/T non_coding_transcript_variant
rs886060336 uncertain-significance, Congenital ichthyosiform erythroderma 157,460,197(-) G/A upstream_transcript_variant
rs1000000193 -- 157,381,313(-) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724404 Gene

Disorders for LOC102724404 Gene

Additional Disease Information for LOC102724404

No disorders were found for LOC102724404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC102724404 Gene

Publications for LOC102724404 Gene

  1. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G … Rudan I (PLoS genetics 2013) 3 58

Products for LOC102724404 Gene

Sources for LOC102724404 Gene

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