Aliases for LOC102724378 Gene

Subcategory (RNA class) for LOC102724378 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC102724378 Gene

  • Uncharacterized LOC102724378 3
  • NONHSAG033890.2 91
  • HSALNG0135343 164
  • Lnc-ANKRD54-3 165

External Ids for LOC102724378 Gene

Previous GeneCards Identifiers for LOC102724378 Gene

  • GC22U900982
  • GC22M037739
  • GC22M038497
  • GC22M042758
  • GC22M042875
  • GC22M042935
  • GC22M044546
  • GC22M038809
  • GC22M039929
  • GC22M040617
  • GC22M041059
  • GC22M041460
  • GC22M041871
  • GC22M042301
  • GC22M042653

Summaries for LOC102724378 Gene

GeneCards Summary for LOC102724378 Gene

LOC102724378 (Uncharacterized LOC102724378) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102724378 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102724378 Gene

Genomics for LOC102724378 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102724378 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J037738 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -1.4 -1408 17.7 SP1 HNRNPL GATAD2A PRDM10 ZNF629 REST IKZF1 KDM1A ZNF692 BACH1 TRIOBP LOC102724378 H1-0 GCAT GGA1 LGALS2 ANKRD54 PICK1 LGALS1 POLR2F
GH22J037761 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -15.9 -15917 3.3 GATAD2A LEF1 IKZF1 JUND PKNOX1 RXRB NR2C1 IRF2 SP1 DPF2 TRIOBP EIF3L GCAT H1-0 FJ601684-301 LOC102724378
GH22J037757 Enhancer 0.8 Ensembl dbSUPER 0.4 -13.4 -13440 0.8 GATAD2A RXRB SP1 FOXA2 YY1 GABPA PCBP1 NR2F2 SAP130 GABPB1 H1-0 FJ601684-301 LOC102724378 TRIOBP
GH22J037764 Enhancer 0.7 Ensembl dbSUPER 0.4 -18.9 -18940 0.2 ZNF629 ZNF316 MAFF MAFK ATF2 ATF3 HLF FJ601684-301 LOC102724378 H1-0 TRIOBP
GH22J037737 Enhancer 0.4 dbSUPER 0.4 +7.9 7919 0.8 ZNF600 ZNF366 ZNF558 TRIOBP H1-0 LOC102724378 HSALNG0135340
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724378 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102724378 Gene

Genomic Locations for LOC102724378 Gene
chr22:37,740,647-37,745,961
(GRCh38/hg38)
Size:
5,315 bases
Orientation:
Minus strand

Genomic View for LOC102724378 Gene

Genes around LOC102724378 on UCSC Golden Path with GeneCards custom track
LOC102724378 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC102724378 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724378 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724378 Gene

Proteins for LOC102724378 Gene

Post-translational modifications for LOC102724378 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724378 Gene

Domains & Families for LOC102724378 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102724378 Gene

Function for LOC102724378 Gene

Phenotypes From GWAS Catalog for LOC102724378 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724378 Gene

Localization for LOC102724378 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724378 Gene

Pathways & Interactions for LOC102724378 Gene

PathCards logo

SuperPathways for LOC102724378 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102724378 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102724378 Gene

Drugs & Compounds for LOC102724378 Gene

No Compound Related Data Available

Transcripts for LOC102724378 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102724378 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000E60B15_9606 lncRNA 924 1

RefSeq: NR_160697,

URS0000E60A2D_9606 lncRNA 908 1

RefSeq: NR_160696,

URS00008C07B9_9606 lncRNA 864 3

LncBook: HSALNT0277743,

LNCipedia: lnc-ANKRD54-3:1,

NONCODE: NONHSAT086630.2,

URS00008BF905_9606 lncRNA 716 3

LncBook: HSALNT0277742,

LNCipedia: lnc-ANKRD54-3:2,

NONCODE: NONHSAT086629.2,

URS00009B585F_9606 lncRNA 726 2

LncBook: HSALNT0277740,

NONCODE: NONHSAT192906.1,

LOC102724378 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724378 Gene

No ASD Table

Relevant External Links for LOC102724378 Gene

GeneLoc Exon Structure for
LOC102724378

No data available for mRNA/cDNA for LOC102724378 Gene

Expression for LOC102724378 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724378 Gene

Orthologs for LOC102724378 Gene

No data available for Orthologs and Evolution for LOC102724378 Gene

Paralogs for LOC102724378 Gene

No data available for Paralogs for LOC102724378 Gene

Variants for LOC102724378 Gene

Additional dbSNP identifiers (rs#s) for LOC102724378 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724378 Gene

Disorders for LOC102724378 Gene

No disorders were found for LOC102724378 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724378 Gene

Publications for LOC102724378 Gene

No publications were found for LOC102724378 Gene.

No data available for Mastermind for LOC102724378 Gene

Products for LOC102724378 Gene

Sources for LOC102724378 Gene