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Aliases for LOC102724323 Gene

Subcategory (RNA class) for LOC102724323 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724323 Gene

  • Uncharacterized LOC102724323 3
  • Novel Transcript 5
  • AL731567.1 5

External Ids for LOC102724323 Gene

Summaries for LOC102724323 Gene

GeneCards Summary for LOC102724323 Gene

LOC102724323 (Uncharacterized LOC102724323) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724323 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724323 Gene

Genomics for LOC102724323 Gene

GeneHancer (GH) Regulatory Elements for LOC102724323 Gene

Promoters and enhancers for LOC102724323 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J045450 Enhancer 0.6 Ensembl 600.7 +0.2 220 5 SP1 RUNX3 JUND ATF3 JUNB BATF HNF4A RXRA POLR2A LOC102724323 WASHC2C MARCH8 ZFAND4 OR13A1 PIR39660 GC10M045536 GC10P045436
GH10J045404 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 18.1 +45.6 45620 9.8 ZKSCAN8 CBFA2T2 ZNF148 MLLT1 GTF2F1 BACH1 NCOA6 TRIM24 ZNF639 SMARCA4 PARGP1 LOC102724323 ALOX5 WASHC2C AGAP4 ENSG00000273363 OR13A1 MARCH8 ZFAND4 PIR47812
GH10J045418 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.6 +32.4 32403 5.2 SP1 NKRF POLR2A ZNF687 ZSCAN21 RELA CREM MLLT1 ZBED1 IKZF1 ALOX5 AGAP4 ZFAND4 LOC102724323 WASHC2C MARCH8 OR13A1 GC10M045366 GC10P045436
GH10J045426 Enhancer 0.8 ENCODE dbSUPER 12.5 +26.8 26793 0.2 ZNF639 ZIC2 JUN ZNF766 JUND MAX FOSL1 ZFHX2 USF2 ZNF395 LOC102724323 MARCH8 GC10P045436 GC10M045366 ALOX5
GH10J045306 Enhancer 0.7 Ensembl 11.6 +145.1 145120 2.4 CC2D1A TRIM24 RAD21 IKZF1 REST PKNOX1 HDAC1 SOX6 ZNF766 NCOR1 GC10M045309 OR13A1 LOC102724323 ALOX5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724323 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724323 Gene

Genomic Locations for LOC102724323 Gene
chr10:45,444,568-45,453,121
(GRCh38/hg38)
Size:
8,554 bases
Orientation:
Minus strand
chr10:45,940,018-45,948,569
(GRCh37/hg19)
Size:
8,552 bases
Orientation:
Minus strand

Genomic View for LOC102724323 Gene

Genes around LOC102724323 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724323 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724323 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724323 Gene

Proteins for LOC102724323 Gene

Post-translational modifications for LOC102724323 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724323 Gene

Domains & Families for LOC102724323 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724323 Gene

Function for LOC102724323 Gene

Phenotypes From GWAS Catalog for LOC102724323 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724323 Gene

Localization for LOC102724323 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724323 Gene

Pathways & Interactions for LOC102724323 Gene

PathCards logo

SuperPathways for LOC102724323 Gene

No Data Available

Interacting Proteins for LOC102724323 Gene

Gene Ontology (GO) - Biological Process for LOC102724323 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724323 Gene

Drugs & Compounds for LOC102724323 Gene

No Compound Related Data Available

Transcripts for LOC102724323 Gene

mRNA/cDNA for LOC102724323 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724323 Gene

No ASD Table

Relevant External Links for LOC102724323 Gene

GeneLoc Exon Structure for
LOC102724323

Expression for LOC102724323 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724323 Gene

Orthologs for LOC102724323 Gene

Evolution for LOC102724323 Gene

ENSEMBL:
Gene Tree for LOC102724323 (if available)
TreeFam:
Gene Tree for LOC102724323 (if available)

No data available for Orthologs for LOC102724323 Gene

Paralogs for LOC102724323 Gene

No data available for Paralogs for LOC102724323 Gene

Variants for LOC102724323 Gene

Sequence variations from dbSNP and Humsavar for LOC102724323 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000188960 -- 45,449,786(-) G/A intron_variant
rs1000682498 -- 45,453,283(-) CTCT/CT upstream_transcript_variant
rs1000823387 -- 45,448,904(-) T/C intron_variant
rs1000834726 -- 45,447,030(-) G/A intron_variant
rs1000924575 -- 45,448,650(-) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724323 Gene

Variant ID Type Subtype PubMed ID
esv3891797 CNV gain 25118596
nsv1043536 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724323 Gene

Disorders for LOC102724323 Gene

No disorders were found for LOC102724323 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724323 Gene

Publications for LOC102724323 Gene

No publications were found for LOC102724323 Gene.

No data available for External Links for LOC102724323 Gene

Products for LOC102724323 Gene

Sources for LOC102724323 Gene

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