Aliases for LOC102724323 Gene

Subcategory (RNA class) for LOC102724323 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC102724323 Gene

  • Uncharacterized LOC102724323 3
  • Novel Transcript 5
  • NONHSAG005769.2 91
  • HSALNG0077664 164
  • Lnc-MARCH8-1 165
  • AL731567.1 5

External Ids for LOC102724323 Gene

Additional External Ids for LOC102724323 Gene

Summaries for LOC102724323 Gene

GeneCards Summary for LOC102724323 Gene

LOC102724323 (Uncharacterized LOC102724323) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102724323 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102724323 Gene

Genomics for LOC102724323 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102724323 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J045450 Enhancer 0.6 Ensembl 600.7 +0.4 421 5.4 SP1 RUNX3 ATF3 JUND JUNB BATF FOSL2 HNF4A RXRA POLR2A LOC102724323 WASHC2C AGAP4 MARCHF8 ZFAND4 OR13A1 lnc-OR13A1-4 piR-46661 NONHSAG005768.2 ALOX5
GH10J045418 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.6 +32.4 32404 5.2 SP1 PRDM10 POLR2A BACH1 JUND ZNF143 RELA ZIC2 SMAD5 TCF12 ALOX5 AGAP4 ZFAND4 LOC102724323 WASHC2C MARCHF8 OR13A1 piR-53813 lnc-WASHC2C-4
GH10J045408 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 12.1 +44.0 44013 0.3 ZNF512 PHF21A PKNOX1 DPF2 NFE2 ZNF316 ZKSCAN1 MAFG ZNF395 MEIS2 piR-53813 ALOX5 LOC102724323 WASHC2C MN309164 MARCHF8
GH10J045426 Enhancer 0.8 ENCODE dbSUPER 12.5 +26.8 26794 0.2 JUND ZIC2 ZNF766 ESR1 JUN FOSL1 MAX ZFHX2 ZNF395 USF2 LOC102724323 MARCHF8 lnc-WASHC2C-4 piR-53813 ALOX5
GH10J045409 Enhancer 0.7 ENCODE 12 +45.3 45274 0 RFX1 PKNOX1 MTA1 DPF2 HDAC1 SOX6 FOXJ2 EP300 ZNF766 NFE2 piR-53813 ALOX5 LOC102724323 MN309164 MARCHF8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724323 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102724323 Gene

Genomic Locations for LOC102724323 Gene
chr10:45,444,568-45,453,122
(GRCh38/hg38)
Size:
8,555 bases
Orientation:
Minus strand
chr10:45,940,018-45,948,569
(GRCh37/hg19)
Size:
8,552 bases
Orientation:
Minus strand

Genomic View for LOC102724323 Gene

Genes around LOC102724323 on UCSC Golden Path with GeneCards custom track
LOC102724323 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC102724323 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724323 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724323 Gene

Proteins for LOC102724323 Gene

Post-translational modifications for LOC102724323 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724323 Gene

Domains & Families for LOC102724323 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102724323 Gene

Function for LOC102724323 Gene

Phenotypes From GWAS Catalog for LOC102724323 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724323 Gene

Localization for LOC102724323 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724323 Gene

Pathways & Interactions for LOC102724323 Gene

PathCards logo

SuperPathways for LOC102724323 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102724323 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102724323 Gene

Drugs & Compounds for LOC102724323 Gene

No Compound Related Data Available

Transcripts for LOC102724323 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102724323 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A7EF_9606 lncRNA 464 3

RefSeq: NR_120674,

LncBook: HSALNT0162148, HSALNT0162149,

LNCipedia: lnc-MARCH8-1:2,

URS00003A6FF1_9606 lncRNA 462 3

Ensembl: ENST00000435635 (view in UCSC) , ENST00000620832 (view in UCSC) ,

LNCipedia: lnc-MARCH8-1:1,

NONCODE: NONHSAT013095.2,

URS00009B3241_9606 lncRNA 495 1

NONCODE: NONHSAT156964.1,

LOC102724323 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102724323 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724323 Gene

No ASD Table

Relevant External Links for LOC102724323 Gene

GeneLoc Exon Structure for
LOC102724323

Expression for LOC102724323 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC102724323 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC102724323

genes like me logo Genes that share expression patterns with LOC102724323: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724323 Gene

Orthologs for LOC102724323 Gene

Evolution for LOC102724323 Gene

ENSEMBL:
Gene Tree for LOC102724323 (if available)
TreeFam:
Gene Tree for LOC102724323 (if available)

No data available for Orthologs for LOC102724323 Gene

Paralogs for LOC102724323 Gene

No data available for Paralogs for LOC102724323 Gene

Variants for LOC102724323 Gene

Additional dbSNP identifiers (rs#s) for LOC102724323 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC102724323 Gene

Variant ID Type Subtype PubMed ID
esv3891797 CNV gain 25118596
nsv1043536 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC102724323 Gene

Disorders for LOC102724323 Gene

Additional Disease Information for LOC102724323

No disorders were found for LOC102724323 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC102724323 Gene

Publications for LOC102724323 Gene

No publications were found for LOC102724323 Gene.

No data available for Mastermind for LOC102724323 Gene

Products for LOC102724323 Gene

Sources for LOC102724323 Gene