Aliases for LOC102724301 Gene

Subcategory (RNA class) for LOC102724301 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC102724301 Gene

  • Uncharacterized LOC102724301 3
  • Novel Transcript 5
  • NONHSAG009834 94
  • HSALNG0087663 169
  • Lnc-RNF26-1 170
  • AP003390.1 5

External Ids for LOC102724301 Gene

Previous GeneCards Identifiers for LOC102724301 Gene

  • GC11U902158

Summaries for LOC102724301 Gene

GeneCards Summary for LOC102724301 Gene

LOC102724301 (Uncharacterized LOC102724301) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102724301 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102724301 Gene

Genomics for LOC102724301 Gene

GeneHancer (GH) Regulatory Elements for LOC102724301 Gene

Promoters and enhancers for LOC102724301 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J119725 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 757.7 -1.1 -1078 5.3 ZNF24 CTCF ZBTB6 RBPJ POLR2A HLF L3MBTL2 RAD21 ZNF652 MNT LOC102724301 NECTIN1 USP2 ENSG00000255247
GH11J119736 Enhancer 0.9 Ensembl ENCODE dbSUPER 7.9 +9.6 9576 4 PKNOX1 TCF7L2 CTCF ZNF692 RCOR1 ZNF18 ZFHX2 KLF17 FEZF1 KLF1 LOC102724301 HMBS lnc-NECTIN1-3
GH11J119743 Promoter/Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 7.3 +13.2 13243 1.5 ZSCAN4 POLR2A CTCF HDGF KDM1A LOC102724301 lnc-NECTIN1-3
GH11J119723 Enhancer 0.3 dbSUPER 7.3 -5.3 -5278 1 ZNF652 GLIS1 LOC102724301 HMBS NECTIN1 ENSG00000255247
GH11J119751 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +23.1 23102 2.6 ZNF24 LCORL RELA NFIB ZNF687 CREM IKZF1 BACH1 IKZF2 ZSCAN4 RNU6-1123P lnc-NECTIN1-3 LOC102724301
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724301 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724301 Gene

Genomic Locations for LOC102724301 Gene
chr11:119,729,399-119,746,833
(GRCh38/hg38)
Size:
17,435 bases
Orientation:
Plus strand

Genomic View for LOC102724301 Gene

Genes around LOC102724301 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724301 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724301 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724301 Gene

Proteins for LOC102724301 Gene

Post-translational modifications for LOC102724301 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724301 Gene

Domains & Families for LOC102724301 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102724301 Gene

Function for LOC102724301 Gene

Phenotypes From GWAS Catalog for LOC102724301 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724301 Gene

Localization for LOC102724301 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724301 Gene

Pathways & Interactions for LOC102724301 Gene

PathCards logo

SuperPathways for LOC102724301 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102724301 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724301 Gene

Drugs & Compounds for LOC102724301 Gene

No Compound Related Data Available

Transcripts for LOC102724301 Gene

mRNA/cDNA for LOC102724301 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(15) RNACentral transcripts :
(4) LncBook transcripts :
(7) NONCODE transcripts :
(14) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724301 Gene

No ASD Table

Relevant External Links for LOC102724301 Gene

GeneLoc Exon Structure for
LOC102724301

Expression for LOC102724301 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC102724301 Gene

genes like me logo Genes that share expression patterns with LOC102724301: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724301 Gene

Orthologs for LOC102724301 Gene

Evolution for LOC102724301 Gene

ENSEMBL:
Gene Tree for LOC102724301 (if available)
TreeFam:
Gene Tree for LOC102724301 (if available)

No data available for Orthologs for LOC102724301 Gene

Paralogs for LOC102724301 Gene

No data available for Paralogs for LOC102724301 Gene

Variants for LOC102724301 Gene

Sequence variations from dbSNP and Humsavar for LOC102724301 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000341394 -- 119,739,680(+) C/T downstream_transcript_variant
rs1000436776 -- 119,732,377(+) C/T intron_variant
rs1000469194 -- 119,732,782(+) A/T intron_variant
rs1000782540 -- 119,737,503(+) T/G intron_variant
rs1001699554 -- 119,733,239(+) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724301 Gene

Variant ID Type Subtype PubMed ID
nsv1037739 CNV gain 25217958
nsv1051769 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724301 Gene

Disorders for LOC102724301 Gene

No disorders were found for LOC102724301 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724301 Gene

Publications for LOC102724301 Gene

No publications were found for LOC102724301 Gene.

No data available for External Links for LOC102724301 Gene

Products for LOC102724301 Gene

Sources for LOC102724301 Gene