Aliases for LOC102724301 Gene

Subcategory (RNA class) for LOC102724301 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC102724301 Gene

  • Uncharacterized LOC102724301 3
  • Novel Transcript 5
  • NONHSAG009834.2 91
  • HSALNG0087663 164
  • Lnc-RNF26-1 165
  • AP003390.1 5

External Ids for LOC102724301 Gene

Previous GeneCards Identifiers for LOC102724301 Gene

  • GC11U902158

Summaries for LOC102724301 Gene

GeneCards Summary for LOC102724301 Gene

LOC102724301 (Uncharacterized LOC102724301) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102724301 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102724301 Gene

Genomics for LOC102724301 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102724301 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J119725 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 607.7 -1.1 -1078 5.3 HNRNPL CTCF PRDM10 ZNF629 LARP7 ZNF143 ZIC2 RBFOX2 RXRB POLR2A LOC102724301 NECTIN1 USP2 NECTIN1-AS1 THY1
GH11J119743 Promoter/Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 7.4 +13.2 13243 1.5 KDM1A ZSCAN4 POLR2A RAD21 HDGF CTCF GATA2 EZH2 LOC102724301 NECTIN1 lnc-NECTIN1-3 TRIM29
GH11J119736 Enhancer 0.9 Ensembl ENCODE dbSUPER 8 +9.6 9576 4 ZNF692 TCF7L2 ZFHX2 CTCF RCOR1 KLF17 ZNF18 FEZF1 KLF1 CHD2 LOC102724301 HMBS NECTIN1 lnc-NECTIN1-3 TRIM29
GH11J119723 Enhancer 0.4 dbSUPER 7.4 -5.3 -5278 1 KDM1A GLIS1 ZNF652 GATA2 LOC102724301 HMBS NECTIN1 NECTIN1-AS1 THY1
GH11J119751 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +23.1 23102 2.6 POLR2A BACH1 RELA ZSCAN4 IKZF2 PKNOX1 EED SIN3A DPF2 RELB RNU6-1123P lnc-NECTIN1-3 LOC102724301 NECTIN1 TRIM29
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724301 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102724301 Gene

Genomic Locations for LOC102724301 Gene
chr11:119,729,399-119,746,833
(GRCh38/hg38)
Size:
17,435 bases
Orientation:
Plus strand

Genomic View for LOC102724301 Gene

Genes around LOC102724301 on UCSC Golden Path with GeneCards custom track
LOC102724301 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC102724301 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724301 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724301 Gene

Proteins for LOC102724301 Gene

Post-translational modifications for LOC102724301 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724301 Gene

Domains & Families for LOC102724301 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102724301 Gene

Function for LOC102724301 Gene

Phenotypes From GWAS Catalog for LOC102724301 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724301 Gene

Localization for LOC102724301 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724301 Gene

Pathways & Interactions for LOC102724301 Gene

PathCards logo

SuperPathways for LOC102724301 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102724301 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102724301 Gene

Drugs & Compounds for LOC102724301 Gene

No Compound Related Data Available

Transcripts for LOC102724301 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102724301 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002DADD2_9606 lncRNA 523 4

RefSeq: NR_120587,

Ensembl: ENST00000533253 (view in UCSC) ,

LNCipedia: lnc-RNF26-1:11,

NONCODE: NONHSAT024685.2,

URS00008BEDE0_9606 lncRNA 6931 3

LncBook: HSALNT0182111,

LNCipedia: lnc-RNF26-1:14,

NONCODE: NONHSAT159757.1,

URS0000D58DCE_9606 lncRNA 1225 2

LncBook: HSALNT0182109,

LNCipedia: lnc-RNF26-1:9,

URS0000D59ADA_9606 lncRNA 1218 2

LncBook: HSALNT0182108,

LNCipedia: lnc-RNF26-1:10,

URS0000D5A033_9606 lncRNA 1187 2

LncBook: HSALNT0182107,

LNCipedia: lnc-RNF26-1:8,

LOC102724301 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102724301 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724301 Gene

No ASD Table

Relevant External Links for LOC102724301 Gene

GeneLoc Exon Structure for
LOC102724301

Expression for LOC102724301 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC102724301 Gene

genes like me logo Genes that share expression patterns with LOC102724301: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724301 Gene

Orthologs for LOC102724301 Gene

Evolution for LOC102724301 Gene

ENSEMBL:
Gene Tree for LOC102724301 (if available)
TreeFam:
Gene Tree for LOC102724301 (if available)

No data available for Orthologs for LOC102724301 Gene

Paralogs for LOC102724301 Gene

No data available for Paralogs for LOC102724301 Gene

Variants for LOC102724301 Gene

Additional dbSNP identifiers (rs#s) for LOC102724301 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC102724301 Gene

Variant ID Type Subtype PubMed ID
nsv1037739 CNV gain 25217958
nsv1051769 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC102724301 Gene

Disorders for LOC102724301 Gene

No disorders were found for LOC102724301 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724301 Gene

Publications for LOC102724301 Gene

No publications were found for LOC102724301 Gene.

No data available for Mastermind for LOC102724301 Gene

Products for LOC102724301 Gene

Sources for LOC102724301 Gene