Aliases for LOC102724163 Gene

Subcategory (RNA class) for LOC102724163 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LOC102724163 Gene

  • Uncharacterized LOC102724163 3
  • NONHSAG020131.2 91
  • Lnc-SLC38A8-2 165
  • HSALNG0113071 164

External Ids for LOC102724163 Gene

Previous GeneCards Identifiers for LOC102724163 Gene

  • GC16M083789

Summaries for LOC102724163 Gene

GeneCards Summary for LOC102724163 Gene

LOC102724163 (Uncharacterized LOC102724163) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC102724163 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC102724163 Gene

Genomics for LOC102724163 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC102724163 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724163 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC102724163 Gene

Genomic Locations for LOC102724163 Gene
chr16:83,789,501-83,843,774
(GRCh38/hg38)
Size:
54,274 bases
Orientation:
Minus strand

Genomic View for LOC102724163 Gene

Genes around LOC102724163 on UCSC Golden Path with GeneCards custom track
LOC102724163 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC102724163 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724163 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724163 Gene

Proteins for LOC102724163 Gene

Post-translational modifications for LOC102724163 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724163 Gene

Domains & Families for LOC102724163 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC102724163 Gene

Function for LOC102724163 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724163 Gene

Localization for LOC102724163 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724163 Gene

Pathways & Interactions for LOC102724163 Gene

PathCards logo

SuperPathways for LOC102724163 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC102724163 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC102724163 Gene

Drugs & Compounds for LOC102724163 Gene

No Compound Related Data Available

Transcripts for LOC102724163 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC102724163 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001EA649_9606 lncRNA 543 4

RefSeq: NR_120308,

Ensembl: ENST00000567342 (view in UCSC) ,

LNCipedia: lnc-SLC38A8-2:3,

NONCODE: NONHSAT144012.2,

URS0000D5C5FC_9606 lncRNA 946 2

LncBook: HSALNT0234413,

LNCipedia: lnc-SLC38A8-2:6,

URS00009BD56E_9606 lncRNA 306 2

LncBook: HSALNT0234424,

NONCODE: NONHSAT174119.1,

URS0000D58061_9606 lncRNA 3433 1

LNCipedia: lnc-SLC38A8-2:12,

URS00019F08DE_9606 lncRNA 3141 1

ENA: MN297396.1:1..3141:ncRNA,

LOC102724163 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC102724163 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724163 Gene

No ASD Table

Relevant External Links for LOC102724163 Gene

GeneLoc Exon Structure for
LOC102724163

Expression for LOC102724163 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC102724163 Gene

genes like me logo Genes that share expression patterns with LOC102724163: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724163 Gene

Orthologs for LOC102724163 Gene

No data available for Orthologs and Evolution for LOC102724163 Gene

Paralogs for LOC102724163 Gene

No data available for Paralogs for LOC102724163 Gene

Variants for LOC102724163 Gene

Additional dbSNP identifiers (rs#s) for LOC102724163 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC102724163 Gene

Variant ID Type Subtype PubMed ID
dgv3054n100 CNV gain 25217958
nsv1064977 CNV loss 25217958
nsv1907 CNV insertion 18451855
nsv471102 CNV gain 18288195
nsv573398 CNV gain 21841781
nsv573401 CNV gain 21841781
nsv573405 CNV gain 21841781
nsv833308 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC102724163 Gene

Disorders for LOC102724163 Gene

No disorders were found for LOC102724163 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724163 Gene

Publications for LOC102724163 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LOC102724163 Gene

Products for LOC102724163 Gene

Sources for LOC102724163 Gene