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Aliases for LOC102724163 Gene

Subcategory (RNA class) for LOC102724163 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724163 Gene

  • Uncharacterized LOC102724163 3

External Ids for LOC102724163 Gene

Previous GeneCards Identifiers for LOC102724163 Gene

  • GC16M083789

Summaries for LOC102724163 Gene

GeneCards Summary for LOC102724163 Gene

LOC102724163 (Uncharacterized LOC102724163) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724163 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724163 Gene

Genomics for LOC102724163 Gene

GeneHancer (GH) Regulatory Elements for LOC102724163 Gene

Promoters and enhancers for LOC102724163 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J083801 Promoter/Enhancer 1.2 Ensembl ENCODE 600.7 +1.5 1494 1.5 SP1 CREB1 RFX1 CTBP1 BMI1 ZKSCAN1 FOS ZNF217 DPF2 CUX1 LOC102724163 ENSG00000260228 GC16P083797
GH16J083803 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.7 -2.8 -2752 5.7 ZFX ELF3 MNT SIX5 NKRF POLR2A ZNF687 AHR TFE3 ELF1 ENSG00000260228 HSBP1 KLHL36 ENSG00000261243 LOC102724163
GH16J083796 Enhancer 0.6 Ensembl 0.4 +7.2 7175 1.6 CREB1 CEBPA GABPA NFE2 FOXA2 NFIL3 HLF MNT GC16P083797 ENSG00000260228 LOC102724163 ENSG00000260788
GH16J083802 Enhancer 0.2 Ensembl 0.7 +2.7 2675 0.2 GC16P083797 LOC102724163 ENSG00000260228
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724163 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724163 Gene

Genomic Locations for LOC102724163 Gene
chr16:83,797,236-83,803,976
(GRCh38/hg38)
Size:
6,741 bases
Orientation:
Minus strand

Genomic View for LOC102724163 Gene

Genes around LOC102724163 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724163 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724163 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724163 Gene

Proteins for LOC102724163 Gene

Post-translational modifications for LOC102724163 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724163 Gene

Domains & Families for LOC102724163 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724163 Gene

Function for LOC102724163 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724163 Gene

Localization for LOC102724163 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724163 Gene

Pathways & Interactions for LOC102724163 Gene

PathCards logo

SuperPathways for LOC102724163 Gene

No Data Available

Interacting Proteins for LOC102724163 Gene

Gene Ontology (GO) - Biological Process for LOC102724163 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724163 Gene

Drugs & Compounds for LOC102724163 Gene

No Compound Related Data Available

Transcripts for LOC102724163 Gene

mRNA/cDNA for LOC102724163 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724163 Gene

No ASD Table

Relevant External Links for LOC102724163 Gene

GeneLoc Exon Structure for
LOC102724163

Expression for LOC102724163 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724163 Gene

Orthologs for LOC102724163 Gene

No data available for Orthologs and Evolution for LOC102724163 Gene

Paralogs for LOC102724163 Gene

No data available for Paralogs for LOC102724163 Gene

Variants for LOC102724163 Gene

Sequence variations from dbSNP and Humsavar for LOC102724163 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000055172 -- 83,805,237(-) T/C upstream_transcript_variant
rs1000138008 -- 83,801,086(-) A/T intron_variant
rs1000368893 -- 83,797,934(-) C/T intron_variant
rs1000373119 -- 83,802,402(-) G/A intron_variant
rs1000803664 -- 83,798,068(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724163 Gene

Variant ID Type Subtype PubMed ID
dgv3054n100 CNV gain 25217958
nsv1064977 CNV loss 25217958
nsv1907 CNV insertion 18451855
nsv471102 CNV gain 18288195
nsv573398 CNV gain 21841781
nsv573401 CNV gain 21841781
nsv573405 CNV gain 21841781
nsv833308 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724163 Gene

Disorders for LOC102724163 Gene

No disorders were found for LOC102724163 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724163 Gene

Publications for LOC102724163 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for LOC102724163 Gene

Products for LOC102724163 Gene

Sources for LOC102724163 Gene

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