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Aliases for LOC102724159 Gene

Aliases for LOC102724159 Gene

  • Periodic Tryptophan Protein 2 Homolog 3 5
  • Uncharacterized Protein 13
  • FP565260.1 5

External Ids for LOC102724159 Gene

Previous GeneCards Identifiers for LOC102724159 Gene

  • GC21U900604

Summaries for LOC102724159 Gene

GeneCards Summary for LOC102724159 Gene

LOC102724159 (Periodic Tryptophan Protein 2 Homolog) is a Protein Coding gene. Among its related pathways are rRNA processing in the nucleus and cytosol and Gene Expression. An important paralog of this gene is PWP2.

Additional gene information for LOC102724159 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724159 Gene

Genomics for LOC102724159 Gene

GeneHancer (GH) Regulatory Elements for LOC102724159 Gene

Promoters and enhancers for LOC102724159 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J005153 Promoter 0.5 Ensembl 600.7 +0.5 466 2.2 LOC102724159 ENSG00000276612
GH21J005139 Enhancer 0.2 Ensembl 0.4 +14.8 14766 1.6 ENSG00000276612 LOC102724159
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724159 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724159 Gene

Genomic Locations for LOC102724159 Gene
chr21:5,130,871-5,154,767
(GRCh38/hg38)
Size:
23,897 bases
Orientation:
Minus strand

Genomic View for LOC102724159 Gene

Genes around LOC102724159 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724159 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724159 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724159 Gene

Proteins for LOC102724159 Gene

  • Protein details for LOC102724159 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0J9YX21-A0A0J9YX21_HUMAN
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A0J9YX21

    Protein attributes for LOC102724159 Gene

    Size:
    79 amino acids
    Molecular mass:
    8770 Da
    Quaternary structure:
    No Data Available
  • Protein details for LOC102724159 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J2E5-A0A0B4J2E5_HUMAN
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    A0A0B4J2E5

    Protein attributes for LOC102724159 Gene

    Size:
    919 amino acids
    Molecular mass:
    102451 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC102724159 Gene

Post-translational modifications for LOC102724159 Gene

No Post-translational modifications

Other Protein References for LOC102724159 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LOC102724159 Gene

Domains & Families for LOC102724159 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC102724159: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724159 Gene

Function for LOC102724159 Gene

Gene Ontology (GO) - Molecular Function for LOC102724159 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding HDA 22658674
GO:0005515 protein binding IEA --
genes like me logo Genes that share ontologies with LOC102724159: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724159 Gene

Localization for LOC102724159 Gene

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoli (3)
  • Cytosol (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for LOC102724159 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm TAS --
GO:0032040 small-subunit processome IBA 21873635
GO:0034388 Pwp2p-containing subcomplex of 90S preribosome IBA 21873635
genes like me logo Genes that share ontologies with LOC102724159: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for LOC102724159 Gene

Pathways & Interactions for LOC102724159 Gene

genes like me logo Genes that share pathways with LOC102724159: view

Gene Ontology (GO) - Biological Process for LOC102724159 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000028 ribosomal small subunit assembly IBA 21873635
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA 21873635
GO:0006364 rRNA processing TAS --
genes like me logo Genes that share ontologies with LOC102724159: view

No data available for SIGNOR curated interactions for LOC102724159 Gene

Drugs & Compounds for LOC102724159 Gene

No Compound Related Data Available

Transcripts for LOC102724159 Gene

mRNA/cDNA for LOC102724159 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724159 Gene

No ASD Table

Relevant External Links for LOC102724159 Gene

GeneLoc Exon Structure for
LOC102724159

Expression for LOC102724159 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724159 Gene

Orthologs for LOC102724159 Gene

Evolution for LOC102724159 Gene

ENSEMBL:
Gene Tree for LOC102724159 (if available)
TreeFam:
Gene Tree for LOC102724159 (if available)

No data available for Orthologs for LOC102724159 Gene

Paralogs for LOC102724159 Gene

Paralogs for LOC102724159 Gene

genes like me logo Genes that share paralogs with LOC102724159: view

Variants for LOC102724159 Gene

Sequence variations from dbSNP and Humsavar for LOC102724159 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1156238683 -- 5,152,995(-) C/T coding_sequence_variant, missense_variant, non_coding_transcript_variant
rs1156317563 -- 5,130,502(-) G/C downstream_transcript_variant
rs1156354347 -- 5,154,688(-) G/A 5_prime_UTR_variant, non_coding_transcript_variant
rs1156575287 -- 5,155,339(-) A/G upstream_transcript_variant
rs1156679058 -- 5,156,432(-) T/C upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724159 Gene

Disorders for LOC102724159 Gene

No disorders were found for LOC102724159 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724159 Gene

Publications for LOC102724159 Gene

  1. CHD3 and CHD4 form distinct NuRD complexes with different yet overlapping functionality. (PMID: 28977666) Hoffmeister H … Längst G (Nucleic acids research 2017) 3 58
  2. The STUbL RNF4 regulates protein group SUMOylation by targeting the SUMO conjugation machinery. (PMID: 29180619) Kumar R … Vertegaal ACO (Nature communications 2017) 3 58
  3. FOXA1 Directs H3K4 Monomethylation at Enhancers via Recruitment of the Methyltransferase MLL3. (PMID: 27926873) Jozwik KM … Carroll JS (Cell reports 2016) 3 58
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  5. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. (PMID: 22681889) Baltz AG … Landthaler M (Molecular cell 2012) 3 58

No data available for External Links for LOC102724159 Gene

Products for LOC102724159 Gene

Sources for LOC102724159 Gene

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