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Aliases for LOC102724064 Gene

Subcategory (RNA class) for LOC102724064 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724064 Gene

  • Uncharacterized LOC102724064 3
  • AP001107.9 5

External Ids for LOC102724064 Gene

Previous GeneCards Identifiers for LOC102724064 Gene

  • GC11U902181
  • GC11P066349
  • GC11P066350
  • GC11P066352
  • GC11P066355
  • GC11P066357
  • GC11P066359
  • GC11P066361
  • GC11P066362

Summaries for LOC102724064 Gene

GeneCards Summary for LOC102724064 Gene

LOC102724064 (Uncharacterized LOC102724064) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724064 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724064 Gene

Genomics for LOC102724064 Gene

GeneHancer (GH) Regulatory Elements for LOC102724064 Gene

Promoters and enhancers for LOC102724064 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J066342 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 661.6 +1.0 1001 11.8 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 LOC102724064 B4GAT1 TRS-GCT3-1 RBM14 ENSG00000258297 LOC105369352 RBM4 EIF1AD RIN1 ENSG00000255320
GH11J066311 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -32.2 -32211 8.3 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A YBX1 DMAP1 CD248 ENSG00000258297 ENSG00000255320 RBM14 EIF1AD PCNX3 RBM4 RIN1 KDM2A SART1
GH11J066333 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 8.8 -10.9 -10865 6.2 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZBTB7B IRF4 SLC30A9 RIN1 ACTN3 ENSG00000254458 B4GAT1 LOC105369351 RAB1B LOC105369352 ENSG00000255320 PACS1 BANF1
GH11J067265 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.6 +930.9 930920 25.5 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 MEF2D SSRP1 GRK2 ANKRD13D SSH3 KDM2A PTPRCAP RHOD CARNS1 C11orf80 PC RAD9A
GH11J065452 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 4.2 -892.5 -892517 5.2 PKNOX1 ATF1 SMAD1 ARNT ARID4B SIN3A ZNF48 TCF12 POLR2B ZNF143 LOC101927789 PCNX3 ZFPL1 NEAT1 EIF1AD FRMD8 POLA2 SF1 SART1 SF3B2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724064 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724064 Gene

Genomic Locations for LOC102724064 Gene
chr11:66,347,544-66,364,804
(GRCh38/hg38)
Size:
17,261 bases
Orientation:
Plus strand

Genomic View for LOC102724064 Gene

Genes around LOC102724064 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724064 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724064 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724064 Gene

Proteins for LOC102724064 Gene

Post-translational modifications for LOC102724064 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724064 Gene

Domains & Families for LOC102724064 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724064 Gene

Function for LOC102724064 Gene

Phenotypes From GWAS Catalog for LOC102724064 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724064 Gene

Localization for LOC102724064 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724064 Gene

Pathways & Interactions for LOC102724064 Gene

SuperPathways for LOC102724064 Gene

No Data Available

Interacting Proteins for LOC102724064 Gene

Gene Ontology (GO) - Biological Process for LOC102724064 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724064 Gene

Drugs & Compounds for LOC102724064 Gene

No Compound Related Data Available

Transcripts for LOC102724064 Gene

mRNA/cDNA for LOC102724064 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724064 Gene

No ASD Table

Relevant External Links for LOC102724064 Gene

GeneLoc Exon Structure for
LOC102724064

Expression for LOC102724064 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724064 Gene

Orthologs for LOC102724064 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC102724064 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 100 (a)
OneToOne
Species where no ortholog for LOC102724064 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC102724064 Gene

ENSEMBL:
Gene Tree for LOC102724064 (if available)
TreeFam:
Gene Tree for LOC102724064 (if available)

Paralogs for LOC102724064 Gene

No data available for Paralogs for LOC102724064 Gene

Variants for LOC102724064 Gene

Sequence variations from dbSNP and Humsavar for LOC102724064 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1190625 likely-benign, benign, not specified, Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 13 66,346,559(+) G/A upstream_transcript_variant
rs139287952 benign, Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 13 66,346,136(+) C/T upstream_transcript_variant
rs142956522 likely-benign, benign, not specified, Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 13 66,346,718(+) C/A upstream_transcript_variant
rs146812867 likely-benign, not specified, Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 13 66,347,477(+) C/G upstream_transcript_variant
rs397509396 pathogenic, Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 13 66,346,080(+) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC102724064 Gene

Disorders for LOC102724064 Gene

Additional Disease Information for LOC102724064

No disorders were found for LOC102724064 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC102724064 Gene

Publications for LOC102724064 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LOC102724064 Gene

Sources for LOC102724064 Gene

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