Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC102724050 Gene

Subcategory (RNA class) for LOC102724050 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC102724050 Gene

  • Uncharacterized LOC102724050 3

External Ids for LOC102724050 Gene

Summaries for LOC102724050 Gene

GeneCards Summary for LOC102724050 Gene

LOC102724050 (Uncharacterized LOC102724050) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC102724050 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC102724050 Gene

Genomics for LOC102724050 Gene

GeneHancer (GH) Regulatory Elements for LOC102724050 Gene

Promoters and enhancers for LOC102724050 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J054350 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 600.7 -1.6 -1624 4.5 SP1 CBFA2T2 ZNF148 ZNF121 ZSCAN21 YY1 SP7 PRDM1 MZF1 EGR1 LOC102724050 ENSG00000258086 ENSG00000258137 RNU6-950P COPZ1 ZNF385A CBX5 GPR84 PDE1B RN7SL744P
GH12J054354 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.3 4257 6.5 ZNF473 SP1 CC2D1A ZFX ELF3 CTCF CBFA2T2 ZNF148 MLLT1 ZNF121 SP1 PCBP2 ENSG00000258344 CBX5 GPR84 ZNF385A MAP3K12 ATF7 LOC100652999 HNRNPA1
GH12J054362 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.4 +10.7 10680 1.5 PRDM1 IKZF1 IKZF2 EED RUNX3 MAX ETV6 GPR84 LOC102724050 ENSG00000258137 ENSG00000258086
GH12J054381 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.3 +33.0 33010 10.6 SP1 ZFX CBFA2T2 ZNF148 MLLT1 ZNF121 NCOA3 CDC5L ZBTB7A SP7 ZNF385A GPR84 MAP3K12 MIR148B ITGA5 RNU6-950P COPZ1 GTSF1 FLJ12825 ENSG00000258086
GH12J054367 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.4 +16.6 16648 4.9 CC2D1A ELF3 CTCF ZKSCAN8 ZNF148 MLLT1 ZNF121 GTF2F1 SP7 ELF1 MIR148B MAP3K12 ENSG00000260470 CBX5 ITGA5 GPR84 FLJ12825 ZNF385A HNRNPA1 LOC102724050
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC102724050 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC102724050 Gene

Genomic Locations for LOC102724050 Gene
chr12:54,353,691-54,467,030
(GRCh38/hg38)
Size:
113,340 bases
Orientation:
Plus strand

Genomic View for LOC102724050 Gene

Genes around LOC102724050 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC102724050 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC102724050 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC102724050 Gene

Proteins for LOC102724050 Gene

Post-translational modifications for LOC102724050 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC102724050 Gene

Domains & Families for LOC102724050 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC102724050 Gene

Function for LOC102724050 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC102724050 Gene

Localization for LOC102724050 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC102724050 Gene

Pathways & Interactions for LOC102724050 Gene

PathCards logo

SuperPathways for LOC102724050 Gene

No Data Available

Interacting Proteins for LOC102724050 Gene

Gene Ontology (GO) - Biological Process for LOC102724050 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC102724050 Gene

Drugs & Compounds for LOC102724050 Gene

No Compound Related Data Available

Transcripts for LOC102724050 Gene

mRNA/cDNA for LOC102724050 Gene

(4) Additional mRNA sequences :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC102724050 Gene

No ASD Table

Relevant External Links for LOC102724050 Gene

GeneLoc Exon Structure for
LOC102724050

Expression for LOC102724050 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC102724050 Gene

Orthologs for LOC102724050 Gene

No data available for Orthologs and Evolution for LOC102724050 Gene

Paralogs for LOC102724050 Gene

No data available for Paralogs for LOC102724050 Gene

Variants for LOC102724050 Gene

Sequence variations from dbSNP and Humsavar for LOC102724050 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000064101 -- 54,449,389(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000064465 -- 54,434,153(+) C/T intron_variant
rs1000184575 -- 54,424,538(+) T/G intron_variant
rs1000212357 -- 54,411,113(+) C/T genic_upstream_transcript_variant, intron_variant
rs1000214590 -- 54,420,616(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC102724050 Gene

Variant ID Type Subtype PubMed ID
esv2665621 CNV deletion 23128226
esv2745915 CNV deletion 23290073
esv2745916 CNV deletion 23290073
esv2745917 CNV deletion 23290073
esv3549239 CNV deletion 23714750
esv3549240 CNV deletion 23714750
esv3629553 CNV loss 21293372
esv995599 CNV deletion 20482838
nsv1049160 CNV gain 25217958
nsv1070112 CNV deletion 25765185
nsv473790 CNV novel sequence insertion 20440878
nsv474052 CNV novel sequence insertion 20440878
nsv508674 CNV deletion 20534489
nsv520202 CNV loss 19592680
nsv559000 CNV loss 21841781
nsv717 CNV deletion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC102724050 Gene

Disorders for LOC102724050 Gene

No disorders were found for LOC102724050 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC102724050 Gene

Publications for LOC102724050 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for LOC102724050 Gene

Products for LOC102724050 Gene

Sources for LOC102724050 Gene

Content
Loading form....